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Article Dans Une Revue EMBO Journal Année : 2023

“Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling

1 ERINHA-AISBL - European Research Infrastructure on Highly Pathogenic Agents
2 EMBL - European Molecular Biology Laboratory
3 Euro-BioImaging - Euro-BioImaging ERIC Bio-Hub
4 University of Dundee
5 EMBL - European Molecular Biology Laboratory [Heidelberg]
6 INSTRUCT ERIC
7 EATRIS - European Advanced Translational Research Infrastructure
8 VIBUGent Center for Plant Systems Biology
9 BBMRI-ERIC - European research infrastructure for biobanking
10 VLIZ - Flanders Marine Institute
11 FZJ - Forschungszentrum Jülich GmbH | Centre de recherche de Jülich | Jülich Research Centre
12 IRCCS - Istituto di Ricerche Farmacologiche "Mario Negri" [Milan, Italy]
13 University of Manchester [Manchester]
14 INFRAFRONTIER GmbH [Neuherberg]
15 TU Wien - Vienna University of Technology = Technische Universität Wien
16 University of Freiburg [Freiburg]
17 Univ West England, Dept Appl Sci, Bristol BS16 1QY, Avon, England
18 EMBL-EBI - European Bioinformatics Institute [Hinxton]
19 ELIXIR Hub [Cambridge]
20 TU Wien - Fakultät für Mathematik und Geoinformation [Wien]
21 Historic England
22 UPF - Universitat Pompeu Fabra [Barcelona]
23 INRAE - Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement
24 University of Oxford
25 CNR - Consiglio Nazionale delle Ricerche [Bologna]
26 Universidad de Sevilla = University of Seville
27 CNR - National Research Council of Italy | Consiglio Nazionale delle Ricerche
28 The Alan Turing Institute
29 ECRIN - European Clinical Research Infrastructures Network [Dusseldorf]
30 EMBL Heidelberg
31 INSERM - Institut National de la Santé et de la Recherche Médicale
32 IBG - Institute of Bio- and Geosciences [Jülich]
33 IRCCS Ospedale Pediatrico Bambino Gesù = Bambino Gesù Children’s Hospital
34 Unipd - Università degli Studi di Padova = University of Padua
35 Veneto Institute of Oncology IOV-IRCCS [Padua, Italy]
36 ISC - Instituto de Salud Carlos III [Madrid]
37 University of Barcelona
38 Oxford e-Research Centre [Oxford]
39 European Molecular Biology Laboratory [Hinxton]
40 Penn State - Pennsylvania State University
41 CENPERM - Center for Permafrost
42 Department of Physical Geography and Ecosystem Science [Lund]
43 UCPH - University of Copenhagen = Københavns Universitet
44 Group Leader Cloud and HPX, Center for Digital Health, BIH@Charité University Medicine
45 Department of Molecular Cell Physiology [VU Amsterdam]
46 ITMP - ITMP Drug Discovery
Jean‐marie Burel
Pauline Audergon
Katrina Exter
Carole Goble
Philipp Gormanns
Björn Grüning
Emma Karoune
Antje Keppler
Jessica Klemeier
Carla Lancelotti
Allyson Lister
Vera Matser
Helen Parkinson
Claudia Pfander
Michael Raess
Ziaurrehman Tanoli
Jonathan Tedds
Martin Weise
Niklas Blomberg
Philip Gribbon

Résumé

The main goals and challenges for the life science communities in the Open Science framework are to increase reuse and sustainability of data resources, software tools, and workflows, especially in large‐scale data‐driven research and computational analyses. Here, we present key findings, procedures, effective measures and recommendations for generating and establishing sustainable life science resources based on the collaborative, cross‐disciplinary work done within the EOSC‐Life (European Open Science Cloud for Life Sciences) consortium. Bringing together 13 European life science research infrastructures, it has laid the foundation for an open, digital space to support biological and medical research. Using lessons learned from 27 selected projects, we describe the organisational, technical, financial and legal/ethical challenges that represent the main barriers to sustainability in the life sciences. We show how EOSC‐Life provides a model for sustainable data management according to FAIR (findability, accessibility, interoperability, and reusability) principles, including solutions for sensitive‐ and industry‐related resources, by means of cross‐disciplinary training and best practices sharing. Finally, we illustrate how data harmonisation and collaborative work facilitate interoperability of tools, data, solutions and lead to a better understanding of concepts, semantics and functionalities in the life sciences.
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hal-04371171 , version 1 (03-01-2024)

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Romain David, Arina Rybina, Jean‐marie Burel, Jean‐karim Heriche, Pauline Audergon, et al.. “Be sustainable”: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling. EMBO Journal, 2023, 42 (23), ⟨10.15252/embj.2023115008⟩. ⟨hal-04371171⟩

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