Article Dans Une Revue EMBO Journal Année : 2023

Be sustainable: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling

1 ERINHA-AISBL - European Research Infrastructure on Highly Pathogenic Agents
2 EMBL - European Molecular Biology Laboratory
3 Euro-BioImaging - Euro-BioImaging ERIC Bio-Hub
4 University of Dundee
5 EMBL - European Molecular Biology Laboratory [Heidelberg]
6 INSTRUCT ERIC
7 EATRIS - European Advanced Translational Research Infrastructure
8 VIB-UGent | PSB - VIB-UGent Center for Plant Systems Biology
9 BBMRI-ERIC - European research infrastructure for biobanking
10 VLIZ - Flanders Marine Institute
11 FZJ - Forschungszentrum Jülich GmbH | Centre de recherche de Jülich | Juelich Research Centre
12 IRCCS - Istituto di Ricerche Farmacologiche "Mario Negri" = Mario Negri Institute for Pharmacological Research
13 University of Manchester [Manchester]
14 INFRAFRONTIER GmbH [Neuherberg]
15 TU Wien - Vienna University of Technology = Technischen Universität Wien
16 Albert-Ludwigs-Universität Freiburg = University of Freiburg
17 Univ West England, Dept Appl Sci, Bristol BS16 1QY, Avon, England
18 EMBL-EBI - European Bioinformatics Institute [Hinxton]
19 ELIXIR Hub [Cambridge]
20 TU Wien - Fakultät für Mathematik und Geoinformation [Wien]
21 Historic England
22 UPF - Universitat Pompeu Fabra [Barcelona]
23 SPO - Sciences Pour l'Oenologie
24 University of Oxford
25 CNR - Consiglio Nazionale delle Ricerche [Bologna]
26 Universidad de Sevilla = University of Seville = Université de Seville
27 CNR - National Research Council of Italy | Consiglio Nazionale delle Ricerche
28 The Alan Turing Institute
29 ECRIN - European Clinical Research Infrastructures Network [Dusseldorf]
30 EMBL Heidelberg
31 INSERM - Institut National de la Santé et de la Recherche Médicale
32 IBG - Institute of Bio- and Geosciences [Jülich]
33 IRCCS Ospedale Pediatrico Bambino Gesù = Bambino Gesù Children’s Hospital
34 Unipd - Università degli Studi di Padova = University of Padua
35 IOV-IRCCS - Istituto Oncologico Veneto = Veneto Institute of Oncology [Padua]
36 ISCIII - Instituto de Salud Carlos III [Madrid]
37 UB - Universitat de Barcelona
38 Oxford e-Research Centre [Oxford]
39 European Molecular Biology Laboratory [Hinxton]
40 Penn State - Pennsylvania State University [State College, PA]
41 CENPERM - Center for Permafrost
42 Department of Physical Geography and Ecosystem Science [Lund]
43 UCPH - Københavns Universitet = University of Copenhagen = Université de Copenhague
44 Department of Molecular Cell Physiology [VU Amsterdam]
Jean‐marie Burel
Pauline Audergon
Katrina Exter
Carole Goble
Philipp Gormanns
Emma Karoune
Jean‐luc Legras
Allyson Lister
Vera Matser
Helen Parkinson
Claudia Pfander
Michael Raess
Ziaurrehman Tanoli
Jonathan Tedds
Harald Wagener
Martin Weise
Niklas Blomberg
Philip Gribbon

Résumé

The main goals and challenges for the life science communities in the Open Science framework are to increase reuse and sustainability of data resources, software tools, and workflows, especially in large‐scale data‐driven research and computational analyses. Here, we present key findings, procedures, effective measures and recommendations for generating and establishing sustainable life science resources based on the collaborative, cross‐disciplinary work done within the EOSC‐Life (European Open Science Cloud for Life Sciences) consortium. Bringing together 13 European life science research infrastructures, it has laid the foundation for an open, digital space to support biological and medical research. Using lessons learned from 27 selected projects, we describe the organisational, technical, financial and legal/ethical challenges that represent the main barriers to sustainability in the life sciences. We show how EOSC‐Life provides a model for sustainable data management according to FAIR (findability, accessibility, interoperability, and reusability) principles, including solutions for sensitive‐ and industry‐related resources, by means of cross‐disciplinary training and best practices sharing. Finally, we illustrate how data harmonisation and collaborative work facilitate interoperability of tools, data, solutions and lead to a better understanding of concepts, semantics and functionalities in the life sciences.

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hal-04371171 , version 1 (03-01-2024)

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Romain David, Arina Rybina, Jean‐marie Burel, Jean‐karim Heriche, Pauline Audergon, et al.. Be sustainable: EOSC‐Life recommendations for implementation of FAIR principles in life science data handling. EMBO Journal, 2023, 42 (23), pp.e115008. ⟨10.15252/embj.2023115008⟩. ⟨hal-04371171⟩
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