Bernoulli-Gaussian model for gene expression analysis - Archive ouverte HAL
Communication Dans Un Congrès Année : 2011

Bernoulli-Gaussian model for gene expression analysis

Résumé

This paper investigates a Bayesian model and a Markov chain Monte Carlo (MCMC) algorithm for gene factor analysis. Each sample in the dataset is decomposed as a linear combination of characteristic gene signatures (also referred to as factors) following a linear mixing model. To enforce the sparsity of the relative contribution (called factor score) of each gene signature to a specific sample, constrained Bernoulli-Gaussian distributions are elected as prior distributions for these factor scores. This distribution allows one to ensure non-negativity and full-additivity constraints for the scores that are interpreted as concentrations. The complexity of the resulting Bayesian estimators is alleviated by using a Gibbs sampler which generates samples distributed according to the posterior distribution of interest. These samples are then used to approximate the standard maximum a posteriori (MAP) or minimum mean square error (MMSE) estimators. The accuracy of the proposed Bayesian method is illustrated by simulations conducted on synthetic and real data.
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Dates et versions

hal-04241309 , version 1 (13-10-2023)

Identifiants

Citer

Cécile Bazot, Nicolas Dobigeon, Jean-Yves Tourneret, Alfred O. Hero. Bernoulli-Gaussian model for gene expression analysis. International Conference on Acoustics, Speech and Signal Processing (ICASSP 2011), IEEE, May 2011, Prague, Czech Republic. pp.5996--5999, ⟨10.1109/ICASSP.2011.5947728⟩. ⟨hal-04241309⟩
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