Deltaic sediments are important for biogeochemical metal cycling since they are hotspots for metal inputs. In addition, they are potential sites for diagenetic processes leading to either the burial of inorganic contaminants or their release. Diffusive fluxes of certain metals (Fe, Mn, Pb, Zn, Cu and Cd) in the sediments of the Mejerda River Delta (MRD) (Gulf of Tunis, Tunisia) were quantified by modeling the available concentration profiles in the pore water. The metals’ burial and sedimentation fluxes were also calculated using both the asymptotic concentrations of available metal profiles and sediment trap results. These fluxes were assembled with the exchange fluxes at the sedimentwater interface in order to develop complete metal transfer budgets. The results showed that budgets of Cu and Zn are almost neutral. The sediment appears to be a good trap for iron since its average burial flux at the three studied stations is about 332.6 g m−2 year−1. Organic matter degradation, carbonate dissolution, and oxyhydroxide reduction are the main mechanisms which accelerate the release of metals associated with the suspended particle matter once they reach the pore water in the seabed.