Eight drill cores cutting through the Mn-carbonate bearing black shales from the Bangombé Plateau were studied. Mn-carbonates (up to 80 m thick) are underlain by laminated pyrite rich shales with organic carbon contents of about 4 wt. % and MnO contents of about 6 wt. %. Mn and Fe, S poor shales are intercalated. Mn-carbonate rich shales (20-29 wt. % MnO) have low contents of phyllosilicates, but are rich in organic carbon (about 7 wt. %) with moderate S contents (about 2 wt. %). All shale facies were deposited in a closed basin through suspension settling and precipitations under anoxic conditions. The Mn-carbonates, towards the top, were formed most likely under suboxic conditions. Pyrite and Mn-carbonates are characterized by bacteriomorphous structures. The latter are composed of micrometric carbonates finely intergrown with clays, quartz and organic matter. They formed around and corroded the dolomite and/or organic matter. Mn-carbonates and pyrite both form also several tenths of micrometer large agglomerates and sub-automorphous grains. The agglomerates can be attributed to evolving diagenesis. Carbonate chemistry varies mainly from rhodochrosite to dolomite. The present results point to primary microbial Mn-carbonate formation. No signs for a Mn-oxide precursor were detected. Slumping and shearing structures, distortion and disruption of thin pyrite beds indicate synsedimentary deformations.