Numerical study of a macroscopic finite pulse model of the diffusion MRI signal
Résumé
Diffusion magnetic resonance imaging (dMRI) is an imaging modality that
probes the diffusion characteristics of a sample
via the application of magnetic field gradient pulses.
The dMRI signal from a heterogeneous sample includes the contribution of
the water proton magnetization from all spatial positions in a voxel.
If the voxel can be spatially divided into different Gaussian diffusion compartments
with inter-compartment exchange governed by linear kinetics, then
the dMRI signal can be approximated using the macroscopic Karger model,
which is a system of coupled ordinary differential equations (ODEs),
under the assumption that the duration of the diffusion-encoding gradient pulses is short
compared to the diffusion time (the narrow pulse assumption).
\soutnew{Recently, a new macroscopic ODE model of the dMRI signal,
the Finite Pulse ODE (FP-ODE) model,
was derived from the Bloch-Torrey partial differential equation (PDE),
without the narrow pulse restriction,
using periodic homogenization techniques.}{Recently, a new macroscopic model of the dMRI signal,
without the narrow pulse restriction,
was derived from the Bloch-Torrey partial differential equation (PDE)
using periodic homogenization techniques.}
\soutnew{When restricted to narrow
pulses, the FP-ODE model has the same form as the Karger model.}{When restricted to narrow
pulses, this new homogenized model has the same form as the Karger model.}
We conduct a numerical study of the \soutnew{FP-ODE}{new homogenized} model
for voxels that are made up of periodic copies of a representative
volume that contains spherical and cylindrical cells of
various sizes and orientations
and show that the signal predicted by the \soutnew{FP-ODE}{new} model approaches the reference signal
obtained by solving the full Bloch-Torrey PDE
in $O(\veps^2)$, where $\veps$ is the ratio between the size of the representative
volume and \soutnew{the diffusion displacement}{a measure of the diffusion length}.
When the narrow gradient pulse assumption is not satisfied,
the \soutnew{FP-ODE}{new homogenized} model offers a much better approximation
of the full PDE signal than the Karger model.
Finally, preliminary results of applying the \soutnew{FP-ODE}{new} model to
a voxel that is not made up of periodic copies of a representative
volume are shown and discussed.
Domaines
Modélisation et simulationOrigine | Fichiers produits par l'(les) auteur(s) |
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