The distribution of protein and carbohydrate concentrations of the particulate matter (size fraction: 0.45–160 mm) was studied, from 22 January 2003 to 02 December 2003, in three ponds of increasing salinity in the Sfax solar saltern (Tunisia). The coupling of N/P: DIN (DIN ¼ NO2 þ NO3 þ NH4þ) to DIP (DIP¼ PO4 3 ) with P/C: protein/carbohydrates ratios along salinity gradient allowed the discrimination of three types of ecosystems. Pond A1 (mean salinity: 45.0 5.4) having marine characteristics showed enhanced P/C ratios during a diatom bloom. N/P and P/C ratios were closely coupled throughout the sampling period, suggesting that the nutritional status is important in determining the seasonal change in the phytoplankton community in pond A1. In pond A16 (mean salinity: 78.7 8.8), despite the high nitrate load, P/C ratios were overall lower than in pond A1. This may be explained by the fact that dinoflagellates, which were the most abundant phytoplankton in pond A16 might be strict heterotrophs and/or mixotrophs, and so they may have not contributed strongly to anabolic processes. Also, N/P and P/C ratios were uncoupled, suggesting that cells in pond A16 were stressed due to the increased salinity caused by water evaporation, and so cells synthesized reserve products such as carbohydrates. In pond M2 (mean salinity: 189.0 13.8), P/C levels were higher than those recorded in either pond A1 or A16. N/P and P/C were more coupled than in pond A16. Species in the hypersaline pond seemed paradoxally less stressed than in pond A16, suggesting that salt-tolerant extremophile species overcome hypersaline constraints and react metabolically by synthesizing carbohydrates and proteins.