Image Année : 2025

MicSim_FluoMT: Two synthetic datasets of images of fluorescent microtubules (First use in Ait Laydi et al., 2025)

MicSim_FluoMT: Deux jeux d'images synthétiques de microtubules fluorescents Premier usage dans Ait Laydi et al., 2025)

Résumé

These datasets support the paper by Ait Laydi et al. (2025). They consist of two synthetic image datasets that mimic microscopy images of fluorescently labeled microtubules. These datasets were used to train various deep learning architectures for segmenting microtubules. They include both the input images (referred to as 'noisy') and their corresponding ground truth images (referred to as 'binary'). The 'easy' dataset contains 1192 images where the fluorescence along each microtubule is uniform. The 'hard' dataset also contains 1192 images with the same ground truth as the 'easy' dataset, but the fluorescence along each microtubule decreases towards the extremities. As a result, segmenting the microtubules is more challenging in the 'hard' dataset, particularly at the extremities." The images were generated using Cytosim [1] and confocalGN [2] softwares: - https://github.com/SergeDmi/ConfocalGN - https://gitlab.com/f-nedelec/cytosim Please cite the reference below when using the dataset: Ait Laydi et al., “Adaptive Attention Residual U-Net for curvilinear structure segmentation in fluorescence microscopy and biomedical images”, 2025. This work was carried out as part of a collaborative project between Hélène Bouvrais from IGDR (CNRS, University of Rennes, France) and Yousef El Mourabit from FST_BM (Sultan Moulay Slimane University, Morocco). 

HAL

Cite hal-05158474v1 Preprint Achraf Ait Laydi, Louis Cueff, Mewen Crespo, Yousef El Mourabit, Hélène Bouvrais. Adaptive Attention Residual U-Net for curvilinear structure segmentation in fluorescence microscopy and biomedical images. 2025. ⟨hal-05158474⟩

DOI

Est identique à 10.5281/zenodo.14696279 Image Bouvrais, H., & Crespo, M. (2025). MicSim_FluoMT: Two synthetic datasets of images of fluorescent microtubules (Ait Laydi et al., 2025) (Version v1) [Graphic]. Zenodo. https://doi.org/10.5281/ZENODO.14696279

Dates et versions

hal-05237288 , version 1 (03-09-2025)

Licence

Identifiants

  • HAL Id : hal-05237288 , version 1

Citer

Hélène Bouvrais, Mewen Crespo. MicSim_FluoMT: Two synthetic datasets of images of fluorescent microtubules (First use in Ait Laydi et al., 2025). France. 2025. ⟨hal-05237288⟩
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