Glass-like Relaxation Dynamics during the Disorder-to-Order Transition of Viral Nucleocapsids - Archive ouverte HAL
Article Dans Une Revue Journal of Physical Chemistry Letters Année : 2024

Glass-like Relaxation Dynamics during the Disorder-to-Order Transition of Viral Nucleocapsids

Résumé

Nucleocapsid self-assembly is an essential yet elusive step in virus replication. Using time-resolved small-angle X-ray scattering on a model icosahedral ssRNA virus, we reveal a previously unreported kinetic pathway. Initially, RNA-bound capsid subunits rapidly accumulate beyond the stoichiometry of native virions. This is followed by a disorder-to-order transition characterized by glass-like relaxation dynamics and the release of excess subunits. Our molecular dynamics simulations, employing a coarsegrained elastic model, confirm the physical feasibility of self-ordering accompanied by subunit release. The relaxation can be modeled by an exponential integral decay on the mean squared radius of gyration, with relaxation times varying within the second range depending on RNA type and subunit concentration. A nanogel model suggests that the initially disordered nucleoprotein complexes quickly reach an equilibrium size, while their mass fractal dimension continues to evolve. Understanding virus self-assembly is not only crucial for combating viral infections but also for designing synthetic virusinspired nanocages for drug delivery applications.

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Dates et versions

hal-04739187 , version 1 (16-10-2024)

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Guillaume Tresset, Siyu Li, Laetitia Gargowitsch, Lauren Matthews, Javier Pérez, et al.. Glass-like Relaxation Dynamics during the Disorder-to-Order Transition of Viral Nucleocapsids. Journal of Physical Chemistry Letters, 2024, 15 (40), pp.10210-10218. ⟨10.1021/acs.jpclett.4c02158⟩. ⟨hal-04739187⟩
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