A mean-field theory for predicting single polymer collapse induced by neutral crowders - Archive ouverte HAL
Article Dans Une Revue Soft Matter Année : 2024

A mean-field theory for predicting single polymer collapse induced by neutral crowders

Gerardo Campos-Villalobos
  • Fonction : Auteur
Giuliana Giunta
Marjolein Dijkstra
  • Fonction : Auteur
Marco Cosentino Lagomarsino

Résumé

Macromolecular crowding can induce the collapse of a single long polymer into a globular form due to depletion forces of entropic nature. This phenomenon has been shown to play a significant role in compacting the genome within the bacterium Escherichia coli into a well-defined region of the cell known as the nucleoid. Motivated by the biological significance of this process, numerous theoretical and computational studies have searched for the primary determinants of the behavior of polymer-crowder phases. However, our understanding of this process remains incomplete and there is debate on a quantitatively unified description. In particular, different simulation studies with explicit crowders have proposed different order parameters as potential predictors for the collapse transition. In this work, we present a comprehensive analysis of published simulation data obtained from different sources. Based on the common behavior we find in this data, we develop a unified phenomenological model that we show to be predictive. Finally, to further validate the accuracy of the model, we conduct new simulations on polymers of various sizes, and investigate the role of jamming of the crowders.
Fichier principal
Vignette du fichier
2023.07.12.548683v4.full.pdf (1.19 Mo) Télécharger le fichier
Origine Fichiers produits par l'(les) auteur(s)
Licence
Copyright (Tous droits réservés)

Dates et versions

hal-04496548 , version 1 (08-03-2024)

Licence

Copyright (Tous droits réservés)

Identifiants

Citer

Quentin Chaboche, Gerardo Campos-Villalobos, Giuliana Giunta, Marjolein Dijkstra, Marco Cosentino Lagomarsino, et al.. A mean-field theory for predicting single polymer collapse induced by neutral crowders. Soft Matter, In press, ⟨10.1039/D3SM01522J⟩. ⟨hal-04496548⟩
45 Consultations
21 Téléchargements

Altmetric

Partager

More