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Poster De Conférence Année : 2009

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Résumé

Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, natural‐language processing, and decision support. BioPortal (http://bioportal.bioontology.org) is an open repository of biomedical ontologies that provides programmatic and web‐based access to ontologies developed in OBO, OWL, Protégé frames, and RDF. BioPortal functionality includes the ability to browse, search, and visualize ontologies. The web interface also facilitates community‐based participation in the evaluation and evolution of ontology content by providing features to add notes to ontology terms, mappings between terms, and provide an overall review of the ontology. BioPortal also provides an integrated search of biomedical data resources such as PubMed, ClinicalTrials.gov, the Gene Expression Omnibus (GEO), and Array Express, through the annotation and indexing of these resources with ontologies in BioPortal. Thus, BioPortal not only provides investigators, clinicians, and developers “one‐stop shopping” to programmatically access biomedical ontologies, but also integrates data from various biomedical resources.
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Dates et versions

hal-04297907 , version 1 (21-11-2023)

Identifiants

  • HAL Id : hal-04297907 , version 1

Citer

Patricia L. Whetzel, Natalya F. Noy, Nigam H. Shah, Benjamin Dai, Michael Dorf, et al.. BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse. 12th Annual Bio-Ontologies SIG Meeting, Poster session, Jun 2009, Stockholm, Sweden. ⟨hal-04297907⟩
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