CNCA aligns small annotated genomes - Archive ouverte HAL
Article Dans Une Revue BMC Bioinformatics Année : 2023

CNCA aligns small annotated genomes

Résumé

We present CNCA, an online tool to align annotated genomes from GenBank files. It generates a nucleotide alignment that is then updated based on the protein sequence alignment. The output final nucleotide alignment matches the protein alignment and guarantees no frameshift. CNCA was designed to aligned closely related small genome sequences up to 50 kb (typically viruses) for which the gene order is conserved.
Fichier principal
Vignette du fichier
CNCA-2023-08-03.pdf (147.93 Ko) Télécharger le fichier
Origine Fichiers produits par l'(les) auteur(s)

Dates et versions

hal-04268598 , version 1 (02-11-2023)
hal-04268598 , version 2 (10-06-2024)

Identifiants

Citer

Jean-Noël Lorenzi, François Graner, Virginie Courtier-Orgogozo, Guillaume Achaz. CNCA aligns small annotated genomes. BMC Bioinformatics, 2023, 25 (1), pp.89. ⟨10.1186/s12859-024-05700-1⟩. ⟨hal-04268598v1⟩
280 Consultations
73 Téléchargements

Altmetric

Partager

More