The reduction of Hamiltonian systems aims to build smaller reduced models, valid over a certain range of time and parameters, in order to reduce computing time. By maintaining the Hamiltonian structure in the reduced model, certain long-term stability properties can be preserved. In this paper, we propose a non-linear reduction method for models coming from the spatial discretization of partial differential equations: it is based on convolutional auto-encoders and Hamiltonian neural networks. Their training is coupled in order to simultaneously learn the encoder-decoder operators and the reduced dynamics. Several test cases on non-linear wave dynamics show that the method has better reduction properties than standard linear Hamiltonian reduction methods.