Umbrella Data Management Plans to Integrate FAIR Data: Lessons From the ISIDORe and BY-COVID Consortia for Pandemic Preparedness
Romain David
(1)
,
Audrey Richard
(1)
,
Claire Connellan
(1)
,
Katharina Lauer
(2)
,
Maria Luisa Chiusano
(3, 4)
,
Carole Goble
(5)
,
Martin Houde
(6)
,
Isabel Kemmer
(7, 8)
,
Antje Keppler
(7, 8)
,
Philippe Lieutaud
(9, 10)
,
Christian Ohmann
(11)
,
Maria Panagiotopoulou
(11)
,
Sara Raza Khan
(11)
,
Arina Rybina
(7, 8)
,
Stian Soiland-Reyes
(2, 12)
,
Charlotte Wit
(13)
,
Rudolf Wittner
(14)
,
Rafael Andrade Buono
(15)
,
Sarah Arnaud Marsh
(16, 17)
,
Pauline Audergon
(18)
,
Dylan Bonfils
(1)
,
Jose-Maria Carazo
(19)
,
Remi Charrel
(10)
,
Frederik Coppens
(15)
,
Wolfgang Fecke
(13)
,
Claudia Filippone
(1)
,
Eva Garcia Alvarez
(14)
,
Sheraz Gul
(20)
,
Henning Hermjakob
(21)
,
Katja Herzog
(13)
,
Petr Holub
(14)
,
Lukasz Kozera
(14)
,
Allyson Lister
(22)
,
José López-Coronado
(23)
,
Bénédicte Madon
(24, 25, 26)
,
Kurt Majcen
(14)
,
William Martin
(27)
,
Wolfgang Müller
(28)
,
Elli Papadopoulou
(29)
,
Christine M.A. Prat
(10, 30, 31)
,
Paolo Romano
(32)
,
Susanna-Assunta Sansone
(33)
,
Gary Saunders
(34)
,
Niklas Blomberg
(2)
,
Jonathan Ewbank
(1)
1
ERINHA-AISBL -
European Research Infrastructure on Highly Pathogenic Agents
2 ELIXIR Hub [Cambridge]
3 University of Naples Federico II = Università degli studi di Napoli Federico II
4 SZN - Stazione Zoologica Anton Dohrn
5 University of Manchester [Manchester]
6 IRIC - Institut de Recherche en Immunologie et en Cancérologie [UdeM-Montréal]
7 EMBL - European Molecular Biology Laboratory
8 Euro-BioImaging - Euro-BioImaging ERIC Bio-Hub
9 AFMB - Architecture et fonction des macromolécules biologiques
10 EVA Global - European Virus Archive
11 ECRIN - European Clinical Research Infrastructures Network [Dusseldorf]
12 UvA - University of Amsterdam [Amsterdam] = Universiteit van Amsterdam
13 EU-OPENSCREEN
14 BBMRI-ERIC - European research infrastructure for biobanking
15 VIBUGent Center for Plant Systems Biology
16 Sonar-Global Network
17 IP - Institut Pasteur (IP), Genetics and Genomics of Insect Vectors Unit (Infravec) & Department of Anthropologie and Ecology of Disease Unit
18 INSTRUCT ERIC
19 CNB-CSIC - Centro national de Biotecnologia = Spanish National Centre for Biotechnology
20 ITMP - Fraunhofer Institute for Translational Medicine and Pharmacology
21 EMBL-EBI - European Bioinformatics Institute [Hinxton]
22 University of Oxford
23 CECT - CECT-University of Valencia
24 ULR - La Rochelle Université
25 Equipe Biotechnologie et Chimie des Bioressources pour la Santé
26 LIENSs - LIttoral ENvironnement et Sociétés
27 European Vaccine Initiative [Heidelberg, Germany]
28 HITS - Heidelberg Institute for Theoretical Studies
29 ATHENA - Research and Innovation Center in Information, Communication and Knowledge Technologies
30 AMU - Aix Marseille Université
31 Aix-Marseille Université-IRD 190-Inserm 1207, Marseille, France
32 IRCCS Ospedale Pediatrico Bambino Gesù [Roma]
33 Oxford e-Research Centre [Oxford]
34 EATRIS - European Advanced Translational Research Infrastructure
2 ELIXIR Hub [Cambridge]
3 University of Naples Federico II = Università degli studi di Napoli Federico II
4 SZN - Stazione Zoologica Anton Dohrn
5 University of Manchester [Manchester]
6 IRIC - Institut de Recherche en Immunologie et en Cancérologie [UdeM-Montréal]
7 EMBL - European Molecular Biology Laboratory
8 Euro-BioImaging - Euro-BioImaging ERIC Bio-Hub
9 AFMB - Architecture et fonction des macromolécules biologiques
10 EVA Global - European Virus Archive
11 ECRIN - European Clinical Research Infrastructures Network [Dusseldorf]
12 UvA - University of Amsterdam [Amsterdam] = Universiteit van Amsterdam
13 EU-OPENSCREEN
14 BBMRI-ERIC - European research infrastructure for biobanking
15 VIBUGent Center for Plant Systems Biology
16 Sonar-Global Network
17 IP - Institut Pasteur (IP), Genetics and Genomics of Insect Vectors Unit (Infravec) & Department of Anthropologie and Ecology of Disease Unit
18 INSTRUCT ERIC
19 CNB-CSIC - Centro national de Biotecnologia = Spanish National Centre for Biotechnology
20 ITMP - Fraunhofer Institute for Translational Medicine and Pharmacology
21 EMBL-EBI - European Bioinformatics Institute [Hinxton]
22 University of Oxford
23 CECT - CECT-University of Valencia
24 ULR - La Rochelle Université
25 Equipe Biotechnologie et Chimie des Bioressources pour la Santé
26 LIENSs - LIttoral ENvironnement et Sociétés
27 European Vaccine Initiative [Heidelberg, Germany]
28 HITS - Heidelberg Institute for Theoretical Studies
29 ATHENA - Research and Innovation Center in Information, Communication and Knowledge Technologies
30 AMU - Aix Marseille Université
31 Aix-Marseille Université-IRD 190-Inserm 1207, Marseille, France
32 IRCCS Ospedale Pediatrico Bambino Gesù [Roma]
33 Oxford e-Research Centre [Oxford]
34 EATRIS - European Advanced Translational Research Infrastructure
Romain David
- Function : Author
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- IdHAL : romain-david
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- IdRef : 233679359
Audrey Richard
- Function : Author
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Claire Connellan
- Function : Author
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Katharina Lauer
- Function : Author
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Maria Luisa Chiusano
- Function : Author
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Carole Goble
- Function : Author
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Martin Houde
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Isabel Kemmer
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Antje Keppler
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Philippe Lieutaud
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Christian Ohmann
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Maria Panagiotopoulou
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Sara Raza Khan
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Arina Rybina
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Stian Soiland-Reyes
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Rudolf Wittner
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Rafael Andrade Buono
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Dylan Bonfils
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Jose-Maria Carazo
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Remi Charrel
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Frederik Coppens
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Claudia Filippone
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Eva Garcia Alvarez
- Function : Author
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Sheraz Gul
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Henning Hermjakob
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- ORCID : 0000-0001-8479-0262
Petr Holub
- Function : Author
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- ORCID : 0000-0002-5358-616X
Lukasz Kozera
- Function : Author
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- ORCID : 0000-0002-9015-4518
Allyson Lister
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- ORCID : 0000-0002-7702-4495
José López-Coronado
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- ORCID : 0000-0001-7442-8091
Bénédicte Madon
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- ORCID : 0000-0001-8608-3895
Kurt Majcen
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- ORCID : 0000-0002-4041-4887
William Martin
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- ORCID : 0000-0003-4839-1752
Wolfgang Müller
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- ORCID : 0000-0002-4980-3512
Elli Papadopoulou
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- ORCID : 0000-0002-0893-8509
Christine M.A. Prat
- Function : Author
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- ORCID : 0000-0002-6963-8673
Paolo Romano
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- ORCID : 0000-0003-4694-3883
Susanna-Assunta Sansone
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- ORCID : 0000-0001-5306-5690
Gary Saunders
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- ORCID : 0000-0002-7468-0008
Niklas Blomberg
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- ORCID : 0000-0003-4155-5910
Jonathan Ewbank
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- ORCID : 0000-0002-1257-6862
- IdRef : 095599231
Abstract
The Horizon Europe project ISIDORe is dedicated to pandemic preparedness and responsiveness research. It brings together 17 research infrastructures (RIs) and networks to provide a broad range of services to infectious disease researchers. An efficient and structured treatment of data is central to ISIDORe’s aim to furnish seamless access to its multidisciplinary catalogue of services, and to ensure that users’ results are treated FAIRly. ISIDORe therefore requires a data management plan (DMP) covering both access management and research outputs, applicable over a broad range of disciplines, and compatible with the constraints and existing practices of its diverse partners. Here, we describe how, to achieve that aim, we undertook an iterative, step-by-step, process to build a community-approved living document, identifying good practices and processes, on the basis of use cases, presented as proof of concepts. International fora such as the RDA and EOSC, and primarily the BY-COVID project, furnished registries, tools and online data platforms, as well as standards, and the support of data scientists. Together, these elements provide a path for building an umbrella, FAIR-compliant DMP, aligned as fully as possible with FAIR principles, which could also be applied as a framework for data management harmonisation in other large-scale, challenge-driven projects. Finally, we discuss how data management and reuse can be further improved through the use of knowledge models when writing DMPs and, how, in the future, an inter-RI network of data stewards could contribute to the establishment of a community of practice, to be integrated subsequently into planned trans-RI competence centres.
Origin : Publisher files allowed on an open archive
Licence : CC BY - Attribution
Licence : CC BY - Attribution