Communication Dans Un Congrès Année : 2005

ClusterInspector: a tool to visualize ontology-based relationships between biological entities

Résumé

In this paper, we define several quantitative measures that are useful when using ontologies to describe biological data. More precisely, we define the precision of a term inside an ontology, and use this concept to quantify the similarity between terms inside an ontology, or, by extension, between biological entities annotated to terms of the ontology. This similarity measure is used to build a hierarchical tree between biological objects annotated to a particular ontology. The graphical representation of this tree allows to easily interpret the relationships between objects of a set based on this ontology, and to identify relevant annotations. We have implemented this principle in ClusterInspector, a tool that allows to browse the resulting tree at various levels of the ontology.

Mots clés

Fichier principal
Vignette du fichier
BerardTichitHerrmannJOBIM05.pdf (192.57 Ko) Télécharger le fichier
Origine Fichiers produits par l'(les) auteur(s)
Licence

Dates et versions

hal-04145768 , version 1 (29-06-2023)

Licence

Identifiants

  • HAL Id : hal-04145768 , version 1

Citer

Sèverine Bérard, Laurent Tichit, Carl Herrmann. ClusterInspector: a tool to visualize ontology-based relationships between biological entities. Les Journées Ouvertes en Biologie, Informatique et Mathématiques Actes de {JOBIM}' 2005, Jul 2005, Lyon, France. ⟨hal-04145768⟩
103 Consultations
125 Téléchargements

Partager

  • More