Nonstructural N- and C-tails of Dbp2 confer the protein full helicase activities
Résumé
Human DDX5 and its yeast ortholog Dbp2 are ATP-dependent RNA helicases that play a key
role in normal cell processes, cancer development and viral infection. The crystal structure of
the RecA1-like domain of DDX5 is available, but the global structure of DDX5/Dbp2
subfamily proteins remains to be elucidated. Here, we report the first X-ray crystal structures
of the Dbp2 helicase core alone and in complex with adenosine diphosphate nucleotide (ADP)
at 3.22 Å and 3.05 Å resolutions, respectively. The structures of the ADP-bound post-hydrolysis
state and apo-state demonstrate the conformational changes that occur when the nucleotides are
released. Our results showed that the helicase core of Dbp2 shifted between open and closed
conformation in solution, but the unwinding activity was hindered when the helicase core was
restricted to a single conformation. A small-angle X-ray scattering (SAXS) experiment showed
that the disordered amino- (N-) and carboxy- (C-) tails are flexible in solution. Truncation
mutations confirmed that the N- and C-tails were critical for the nucleic acid binding, ATPase,
and unwinding activities, with the C-tail being exclusively responsible for the annealing activity.
Furthermore, we labeled the terminal tails to observe the conformational changes between the
disordered tails and the helicase core upon binding nucleic acid substrates. Specifically, we
found that the nonstructural N- and C-tails bind to RNA substrates and tether them to the
helicase core domain, thereby conferring full helicase activities to the Dbp2 protein. This
distinct structural characteristic provides new insight into the mechanism of DEAD-box RNA
helicases.