Recent taphonomic studies have shown that avian predators such as owls are responsible for most small-mammal fossil accumulations, and that predators cause bone loss and breakage as well as modification to the surface of bones that are preserved. However, the specific physiochemical alterations and the alterations of bone microstructures that predators induce remain poorly understood. In order to better separate and characterize the effects of bone digestion by owls, we performed an experimental study to simulate digestion by a predator. We put fresh rodent long bones into various solutions to simulate the digestive effects of predators. We first tested an acid solution, followed by other solutions containing key enzymes such as trypsin, lipase, and trypsin + lipase. Next, we compared the results of the simulated digestion experiments with partly digested long bones recovered from Tyto alba and Bubo bubo pellets. We observed that acid action alone did not reproduce the modifications observed on bones from owl pellets, while the enzymatic activity (notably trypsin and trypsin + lipase) produced modifications most similar to those observed on the bones from the owl pellets. These results open a promising field of future experimentation to better understand the early diagenetic modification induced in small mammal bones by digestion, which can improve our ability to recognize the role of nocturnal predators in fossil accumulations.