Mechanisms underlying biological diversities at different scales have received significant attention over the last decades. The hypothesis of whether local abiotic factors, driving functional and phylogenetic diversities, can differ among taxa of arthropods remains under-investigated. In this study, we compared correlations and drivers of functional diversity (FD) and phylogenetic diversity (PD) between spiders and carabids, two dominant taxa of ground-dwelling arthropods in salt marshes. Both taxa exhibited high correlation between FD and PD; the correlation was even higher in carabids, probably owing to their lower species richness. Analyses using structural equation modelling highlighted that FD and PD were positively linked to taxonomic diversity (TD) in both taxa; however, abiotic factors driving the FD and PD differed between spiders and carabids. Salinity particularly drove the TD of carabids, but not that of spiders, suggesting that spiders are phenotypically more plastic and less selected by this factor. Conversely, PD was influenced by salinity in spiders, but not in carabids. This result can be attributed to the different evolutionary history and colonization process of salt marshes between the two model taxa. Finally, our study highlights that, in taxa occupying the same niche in a constrained habitat, FD and PD can have different drivers, and thereby different filtering mechanisms.