Megaphylogeny resolves global patterns of mushroom evolution
Torda Varga
(1)
,
Krisztina Krizsán
(1)
,
Csenge Földi
(1)
,
Bálint Dima
(2)
,
Marisol Sánchez-García
(3)
,
Santiago Sánchez-Ramírez
(4)
,
Gergely J Szöllősi
(2)
,
János G Szarkándi
(5)
,
Viktor Papp
(6)
,
László Albert
(7)
,
William Andreopoulos
(8)
,
Claudio Angelini
(9)
,
Vladimír Antonín
(10)
,
Kerrie W Barry
(8)
,
Neale L Bougher
(11)
,
Peter Buchanan
(12)
,
Bart Buyck
(13, 14, 15)
,
Viktória Bense
(1)
,
Pam Catcheside
(16)
,
Mansi Chovatia
(8)
,
Jerry Cooper
(12)
,
Wolfgang Dämon
,
Dennis Desjardin
(17)
,
Péter Finy
,
József Geml
(18)
,
Sajeet Haridas
(8)
,
Karen Hughes
(19)
,
Alfredo Justo
(3)
,
Dariusz Karasiński
(20)
,
Ivona Kautmanova
(21)
,
Brigitta Kiss
(1)
,
Sándor Kocsubé
(5)
,
Heikki Kotiranta
(22)
,
Kurt M Labutti
(8)
,
Bernardo E Lechner
(23)
,
Kare Liimatainen
(24)
,
Anna Lipzen
(8)
,
Zoltán Lukács
,
Sirma Mihaltcheva
(8)
,
Louis N Morgado
(18, 25)
,
Tuula Niskanen
(24)
,
Machiel E Noordeloos
(18)
,
Robin A Ohm
(26)
,
Beatriz Ortiz-Santana
(27)
,
Clark Ovrebo
(28)
,
Nikolett Rácz
(5)
,
Robert Riley
(8)
,
Anton Savchenko
(29, 30)
,
Anton Shiryaev
(31)
,
Karl Soop
(32)
,
Viacheslav Spirin
(29)
,
Csilla Szebenyi
(5, 33)
,
Michal Tomšovský
(34)
,
Rodham E Tulloss
(35, 36)
,
Jessie Uehling
(37)
,
Igor V Grigoriev
(8, 37)
,
Csaba Vágvölgyi
(5)
,
Tamás Papp
(5, 30)
,
Francis Martin
(38)
,
Otto Miettinen
(29)
,
David S Hibbett
(3)
,
László G Nagy
(1)
1
MTA -
Hungarian Academy of Sciences
2 ELTE - Eötvös Loránd University
3 Clark University
4 University of Toronto
5 University of Szeged [Szeged]
6 Szent István University
7 Hungarian Mycological Society
8 United States Department of Energy
9 Jardín Botánico Nacional Dr. Rafael Ma. Moscoso
10 Moravian Museum
11 Western Australian Herbarium
12 Manaaki Whenua – Landcare Research [Lincoln]
13 SU - Sorbonne Université
14 CNRS - Centre National de la Recherche Scientifique
15 ISYEB - Institut de Systématique, Evolution, Biodiversité
16 State Herbarium South Australia
17 SFSU - San Francisco State University
18 National Biodiversityt Center
19 University of Tennessee
20 PAN - Polska Akademia Nauk = Polish Academy of Sciences = Académie polonaise des sciences
21 Slovak National Museum
22 SYKE - Finnish Environment Institute
23 UBA - Universidad de Buenos Aires
24 Royal Botanic Gardens [Kew]
25 UiO - University of Oslo
26 Universiteit Utrecht / Utrecht University [Utrecht]
27 US Forest Service
28 OU - University of Oklahoma
29 Helsingin yliopisto = Helsingfors universitet = University of Helsinki
30 University of Tartu
31 RAS - the Russian Academy of Sciences [Moscow, Russia]
32 NRM - Swedish Museum of Natural History
33 MTA Centre for Ecological Research
34 MENDELU - Mendel University in Brno
35 Herbarium Amanitarum Rooseveltensis
36 NYBG - New York Botanical Garden
37 UC Berkeley - University of California [Berkeley]
38 IAM - Interactions Arbres-Microorganismes
2 ELTE - Eötvös Loránd University
3 Clark University
4 University of Toronto
5 University of Szeged [Szeged]
6 Szent István University
7 Hungarian Mycological Society
8 United States Department of Energy
9 Jardín Botánico Nacional Dr. Rafael Ma. Moscoso
10 Moravian Museum
11 Western Australian Herbarium
12 Manaaki Whenua – Landcare Research [Lincoln]
13 SU - Sorbonne Université
14 CNRS - Centre National de la Recherche Scientifique
15 ISYEB - Institut de Systématique, Evolution, Biodiversité
16 State Herbarium South Australia
17 SFSU - San Francisco State University
18 National Biodiversityt Center
19 University of Tennessee
20 PAN - Polska Akademia Nauk = Polish Academy of Sciences = Académie polonaise des sciences
21 Slovak National Museum
22 SYKE - Finnish Environment Institute
23 UBA - Universidad de Buenos Aires
24 Royal Botanic Gardens [Kew]
25 UiO - University of Oslo
26 Universiteit Utrecht / Utrecht University [Utrecht]
27 US Forest Service
28 OU - University of Oklahoma
29 Helsingin yliopisto = Helsingfors universitet = University of Helsinki
30 University of Tartu
31 RAS - the Russian Academy of Sciences [Moscow, Russia]
32 NRM - Swedish Museum of Natural History
33 MTA Centre for Ecological Research
34 MENDELU - Mendel University in Brno
35 Herbarium Amanitarum Rooseveltensis
36 NYBG - New York Botanical Garden
37 UC Berkeley - University of California [Berkeley]
38 IAM - Interactions Arbres-Microorganismes
Bart Buyck
- Fonction : Auteur
- PersonId : 784043
- ORCID : 0000-0001-6824-5280
Wolfgang Dämon
- Fonction : Auteur
Péter Finy
- Fonction : Auteur
Sajeet Haridas
- Fonction : Auteur
- PersonId : 780489
- ORCID : 0000-0002-0229-0975
Anna Lipzen
- Fonction : Auteur
- PersonId : 773817
- ORCID : 0000-0003-2293-9329
Zoltán Lukács
- Fonction : Auteur
Otto Miettinen
- Fonction : Auteur
- PersonId : 798146
- ORCID : 0000-0001-7502-710X
László G Nagy
Connectez-vous pour contacter l'auteur
- Fonction : Auteur correspondant
- PersonId : 863595
Connectez-vous pour contacter l'auteur
Résumé
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.
Domaines
Sciences du Vivant [q-bio]Format du dépôt | Fichier |
---|---|
Type de dépôt | Article dans une revue |
Titre |
en
Megaphylogeny resolves global patterns of mushroom evolution
|
Résumé |
en
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles in the ecosystem, including wood decomposers, pathogens or mycorrhizal mutualists. Despite the importance of mushroom-forming fungi, large-scale patterns of their evolutionary history are poorly known, in part due to the lack of a comprehensive and dated molecular phylogeny. Here, using multigene and genome-based data, we assemble a 5,284-species phylogenetic tree and infer ages and broad patterns of speciation/extinction and morphological innovation in mushroom-forming fungi. Agaricomycetes started a rapid class-wide radiation in the Jurassic, coinciding with the spread of (sub)tropical coniferous forests and a warming climate. A possible mass extinction, several clade-specific adaptive radiations and morphological diversification of fruiting bodies followed during the Cretaceous and the Paleogene, convergently giving rise to the classic toadstool morphology, with a cap, stalk and gills (pileate-stipitate morphology). This morphology is associated with increased rates of lineage diversification, suggesting it represents a key innovation in the evolution of mushroom-forming fungi. The increase in mushroom diversity started during the Mesozoic-Cenozoic radiation event, an era of humid climate when terrestrial communities dominated by gymnosperms and reptiles were also expanding.
|
Auteur(s) |
Torda Varga
1
, Krisztina Krizsán
1
, Csenge Földi
1
, Bálint Dima
2
, Marisol Sánchez-García
3
, Santiago Sánchez-Ramírez
4
, Gergely J Szöllősi
2
, János G Szarkándi
5
, Viktor Papp
6
, László Albert
7
, William Andreopoulos
8
, Claudio Angelini
9
, Vladimír Antonín
10
, Kerrie W Barry
8
, Neale L Bougher
11
, Peter Buchanan
12
, Bart Buyck
13, 14, 15
, Viktória Bense
1
, Pam Catcheside
16
, Mansi Chovatia
8
, Jerry Cooper
12
, Wolfgang Dämon
, Dennis Desjardin
17
, Péter Finy
, József Geml
18
, Sajeet Haridas
8
, Karen Hughes
19
, Alfredo Justo
3
, Dariusz Karasiński
20
, Ivona Kautmanova
21
, Brigitta Kiss
1
, Sándor Kocsubé
5
, Heikki Kotiranta
22
, Kurt M Labutti
8
, Bernardo E Lechner
23
, Kare Liimatainen
24
, Anna Lipzen
8
, Zoltán Lukács
, Sirma Mihaltcheva
8
, Louis N Morgado
18, 25
, Tuula Niskanen
24
, Machiel E Noordeloos
18
, Robin A Ohm
26
, Beatriz Ortiz-Santana
27
, Clark Ovrebo
28
, Nikolett Rácz
5
, Robert Riley
8
, Anton Savchenko
29, 30
, Anton Shiryaev
31
, Karl Soop
32
, Viacheslav Spirin
29
, Csilla Szebenyi
5, 33
, Michal Tomšovský
34
, Rodham E Tulloss
35, 36
, Jessie Uehling
37
, Igor V Grigoriev
8, 37
, Csaba Vágvölgyi
5
, Tamás Papp
5, 30
, Francis Martin
38
, Otto Miettinen
29
, David S Hibbett
3
, László G Nagy
1
1
MTA -
Hungarian Academy of Sciences
( 306576 )
- Széchenyi István sqr. 9, 1051 Budapest
- Hongrie
2
ELTE -
Eötvös Loránd University
( 305785 )
- H-1053 Budapest, Egyetem tér 1-3
- Hongrie
3
Clark University
( 325061 )
- Worcester, MA 01610, USA
- États-Unis
4
University of Toronto
( 526266 )
- Canada
5
University of Szeged [Szeged]
( 63200 )
- Dugonics square 13 H-6720 Szeged
- Hongrie
6
Szent István University
( 413921 )
- H-2100 Gödöllő
- Hongrie
7
Hungarian Mycological Society
( 573206 )
- Hongrie
8
United States Department of Energy
( 359292 )
- États-Unis
9
Jardín Botánico Nacional Dr. Rafael Ma. Moscoso
( 573207 )
- République dominicaine
10
Moravian Museum
( 532568 )
- Zelný trh 6, Brno 61137
- Tchéquie
11
Western Australian Herbarium
( 573208 )
- Australie
12
Manaaki Whenua – Landcare Research [Lincoln]
( 474661 )
- Nouvelle-Zélande
13
SU -
Sorbonne Université
( 413221 )
- 21 rue de l’École de médecine - 75006 Paris
- France
14
CNRS -
Centre National de la Recherche Scientifique
( 441569 )
- France
15
ISYEB -
Institut de Systématique, Evolution, Biodiversité
( 542193 )
- 57 rue Cuvier - CP 50 - 75005 Paris
- France
16
State Herbarium South Australia
( 573209 )
- Australie
17
SFSU -
San Francisco State University
( 372009 )
- 1600 Holloway Ave
San Francisco
CA 94132
- États-Unis
18
National Biodiversityt Center
( 573210 )
- Pays-Bas
19
University of Tennessee
( 571174 )
- États-Unis
20
PAN -
Polska Akademia Nauk = Polish Academy of Sciences = Académie polonaise des sciences
( 303306 )
- Pałac Kultury i Nauki, pl. Defilad 1, 00-901 Warszawa, skrytka pocztowa 24, Polska
- Pologne
21
Slovak National Museum
( 573211 )
- Slovaquie
22
SYKE -
Finnish Environment Institute
( 409463 )
- P.O.Box 140, FI-00251 Helsinki
- Finlande
23
UBA -
Universidad de Buenos Aires
( 573212 )
- Argentine
24
Royal Botanic Gardens [Kew]
( 578310 )
- Kew, West Sussex
- Royaume-Uni
25
UiO -
University of Oslo
( 50791 )
- P.O 1072 Blindern 0316 Oslo
- Norvège
26
Universiteit Utrecht / Utrecht University [Utrecht]
( 300572 )
- Heidelberglaan 8, 3584 CS Utrecht
- Pays-Bas
27
US Forest Service
( 360591 )
-
- France
28
OU -
University of Oklahoma
( 48144 )
- 660 Parrington Oval,
Norman, OK 73019-0390
(405) 325-0311
- États-Unis
29
Helsingin yliopisto = Helsingfors universitet = University of Helsinki
( 50895 )
- Yliopistonkatu 4, 00100 Helsinki
- Finlande
30
University of Tartu
( 116369 )
- University of Tartu, Ülikooli 18, 50090 TARTU
- Estonie
31
RAS -
the Russian Academy of Sciences [Moscow, Russia]
( 577650 )
- Leninsky prospekt 14, Moscow
- Russie
32
NRM -
Swedish Museum of Natural History
( 106899 )
- Frescativägen 40, P.O. Box 50007, 10405 Stockholm
- Suède
33
MTA Centre for Ecological Research
( 416104 )
- Hongrie
34
MENDELU -
Mendel University in Brno
( 325205 )
- Zemědělská 1/1665, 613 00 Brno, Czech Republic
- Tchéquie
35
Herbarium Amanitarum Rooseveltensis
( 573214 )
- États-Unis
36
NYBG -
New York Botanical Garden
( 311774 )
- 2900 Southern Blvd, The Bronx, NY 10458, États-Unis
- États-Unis
37
UC Berkeley -
University of California [Berkeley]
( 563719 )
- Berkeley, CA
- États-Unis
38
IAM -
Interactions Arbres-Microorganismes
( 412018 )
- INRA - Université de Lorraine, rue d'Amance, 54280 Champenoux
- France
|
Page/Identifiant |
668-678
|
Vulgarisation |
Non
|
Comité de lecture |
Oui
|
URL éditeur |
https://www.nature.com/natecolevol/
|
Public visé |
Scientifique
|
Sous-type de document pour les Articles |
Research article
|
Langue du document |
Anglais
|
Nom de la revue |
|
Licence |
Paternité
|
Audience |
Non spécifiée
|
Date de publication |
2019
|
Volume |
3
|
Numéro |
4
|
Domaine(s) |
|
Financement |
|
Voir aussi |
|
Indexation contrôlée |
|
Mots-clés |
en
PHYLOGENETIC ANALYSIS, FORMING FUNGI, EXPLOSIVE DIVERSIFICATION, ADAPTIVE RADIATION, EXTINCTION RATES, R PACKAGE, DIVERSITY, SPECIATION, LIKELIHOOD, BINARY, evolutionary history, phylogeny
fr
histoire évolutive, arbre phylogénétique, basidiomycete, phylogénie, phylogénie moléculaire, champignon
|
DOI | 10.1038/s41559-019-0834-1 |
ProdINRA | 478581 |
Pubmed Id | 30886374 |
UT key WOS | 000462542100030 |
Origine :
Accord explicite pour ce dépôt
Loading...