DRUNET : a dilated-residual U-Net deep learning network to segment optic nerve head tissues in optical coherence tomography images - Archive ouverte HAL
Journal Articles Biomedical optics express Year : 2018

DRUNET : a dilated-residual U-Net deep learning network to segment optic nerve head tissues in optical coherence tomography images

Sripad Krishna Devalla
  • Function : Author
Prajwal P. Renukanand
  • Function : Author
Bharathwaj K. Sreedhar
  • Function : Author
Giridhar Subramanian
  • Function : Author
Liang Zhang
  • Function : Author
  • PersonId : 1012730
Shamira Perera
  • Function : Author
Jean-Martial Mari
Khai Sing Chin
  • Function : Author
Tin A. Tun
  • Function : Author
Nicholas G. Strouthidis
  • Function : Author
Alexandre H. Thiéry
  • Function : Author
Michaël J. A. Girard
  • Function : Author

Abstract

Given that the neural and connective tissues of the optic nerve head (ONH) exhibit complex morphological changes with the development and progression of glaucoma, their simultaneous isolation from optical coherence tomography (OCT) images may be of great interest for the clinical diagnosis and management of this pathology. A deep learning algorithm (custom U-NET) was designed and trained to segment 6 ONH tissue layers by capturing both the local (tissue texture) and contextual information (spatial arrangement of tissues). The overall Dice coefficient (mean of all tissues) was 0.91 ± 0.05 when assessed against manual segmentations performed by an expert observer. Further, we automatically extracted six clinically relevant neural and connective tissue structural parameters from the segmented tissues. We offer here a robust segmentation framework that could also be extended to the 3D segmentation of the ONH tissues. "Comparison of Bruch's membrane opening minimum rim width and peripapillary retinal nerve fiber layer thickness in early glaucoma assessment BMO-MRW and RNFLT in early glaucoma assessment," Invest.
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Dates and versions

hal-02145030 , version 1 (31-05-2019)

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Sripad Krishna Devalla, Prajwal P. Renukanand, Bharathwaj K. Sreedhar, Giridhar Subramanian, Liang Zhang, et al.. DRUNET : a dilated-residual U-Net deep learning network to segment optic nerve head tissues in optical coherence tomography images. Biomedical optics express, 2018, 9 (7), pp.3244-3265. ⟨10.1364/BOE.9.003244⟩. ⟨hal-02145030⟩

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