Probabilistic planners are very flexible tools that can provide good solutions for difficult tasks. However, they rely on a model of the domain, which may be costly to either hand code or automatically learn for complex tasks. We propose a new learning approach that (a) requires only a set of state transitions to learn the model; (b) can cope with uncertainty in the effects; (c) uses a relational representation to generalize over different objects ; and (d) in addition to action effects, it can also learn exogenous effects that are not related to any action , e.g., moving objects, endogenous growth and natural development. The proposed learning approach combines a multi-valued variant of inductive logic programming for the generation of candidate models, with an optimization method to select the best set of planning operators to model a problem. Finally, experimental validation is provided that shows improvements over previous work.