Structure of hydrocarbonoclastic nitrate-reducing bacterial communities in bioturbated coastal marine sediments
Résumé
The organisation of denitrifying microorganisms in oil-polluted bioturbated sediments was investigated in mesocosms under conditions as closer as possible to that observed in the environment. Molecular and culture-dependent approaches revealed that denitrifying Gammaproteobacteria were abundant in oil-polluted and bioturbated sediments suggesting that they may play a key role in hydrocarbon degradation in the environment. T-RFLP and gene libraries analyses targeting nirS gene showed that denitrifying microbial communities structure was slightly affected by either the addition of Hediste diversicolor or crude oil revealing the metabolic versatility of denitrifying microorganisms. From oil-polluted sediments, distinct denitrifying hydrocarbonoclastic bacterial consortia were obtained by enrichment cultures on high molecular weight polyaromatic hydrocarbons (PAHs) (dibenzothiophene, fluoranthene, pyrene and chrysene) under nitrate-reducing conditions. Interestingly, molecular characterisation of the consortia showed that the denitrifying communities obtained from oiled microcosms with addition of H. diversicolor were different to that observed without H. diversicolor addition, especially with fluoranthene and chrysene revealing the bacterial diversity involved in the degradation of these PAHs. The manuscript describes the structure of denitrifying community during oil degradation in bioturbated marine sediments, by molecular and culture-dependent approaches.
Mots clés
Bacteria
Bacteria (microorganisms)
Bioturbation
classification
Cultivable bacteria
Gammaproteobacteria
genetics
Geologic Sediments
Hydrocarbon
Hydrocarbons
isolation and purification
metabolism
microbiology
nirS gene
Nitrates
nitric acid derivative
nitrite reductase
Nitrite Reductases
oil spill
PAH biodegradation
Petroleum pollution
phylogeny
Polymorphism
Restriction Fragment Length
restriction fragment length polymorphism
sediment
T-RFLP