The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas
(1)
,
Manfred Binder
(1)
,
Robert Riley
(2)
,
Kerrie Barry
(2)
,
Robert A. Blanchette
(3)
,
Bernard Henrissat
(4)
,
Angel T. Martínez
(5)
,
Robert Otillar
(2)
,
Joseph W. Spatafora
(6)
,
Jagjit S. Yadav
(7)
,
Andrea Aerts
(2)
,
Isabelle Benoit
(8, 9)
,
Alex Boyd
(6)
,
Alexis Carlson
(1)
,
Alex Copeland
(2)
,
Pedro M Coutinho
(4)
,
Ronald P. de Vries
(8, 9)
,
Patricia Ferreira
(10)
,
Keisha Findley
(11)
,
Brian Foster
(2)
,
Jill Gaskell
(12)
,
Dylan Glotzer
(1)
,
Pawel Górecki
(13)
,
Joseph Heitman
(11)
,
Cedar Hesse
(6)
,
Chiaki Hori
(14)
,
Kiyohiko Igarashi
(14)
,
Joel A. Jurgens
(3)
,
Nathan Kallen
(1)
,
Phil Kersten
(12)
,
Annegret Kohler
(15, 16)
,
Ursula Kües
(17)
,
T. K. Arun Kumar
(18)
,
Alan Kuo
(2)
,
Kurt Labutti
(2)
,
Luis F. Larrondo
(19)
,
Erika Lindquist
(2)
,
Albee Ling
(1)
,
Vincent Lombard
(4)
,
Susan Lucas
(2)
,
Taina Lundell
(20)
,
Rachael Martin
(1)
,
David J. Mclaughlin
(18)
,
Ingo Morgenstern
(21)
,
Emmanuelle Morin
(15, 16)
,
Claude Murat-Furminieux
(15, 16)
,
Laszlo G. Nagy
(1)
,
Matt Nolan
(2)
,
Robin A. Ohm
(2)
,
Aleksandrina Patyshakuliyeva
(9)
,
Antonis Rokas
(22)
,
Francisco J. Ruiz-Dueñas
(5)
,
Grzegorz Sabat
(23)
,
Asaf Salamov
(2)
,
Masahiro Samejima
(14)
,
Jeremy Schmutz
(24)
,
Jason C. Slot
(22)
,
Franz St. John
(12)
,
Jan Stenlid
(25)
,
Hui Sun
(2)
,
Sheng Sun
(11)
,
Khajamohiddin Syed
(7)
,
Adrian Tsang
(21)
,
Ad Wiebenga
(9)
,
Darcy Young
(1)
,
Antonio Pisabarro
(26)
,
Daniel C. Eastwood
(27)
,
Francis Martin
(15, 16)
,
Dan Cullen
(12)
,
Igor V. Grigoriev
(2)
,
David S. Hibbett
(1)
1
Biology Department
2 Joint Genome Institute
3 Department of Plant Pathology
4 AFMB - Architecture et fonction des macromolécules biologiques
5 Centro de investigaciones biológicas
6 Department of Botany and Plant Pathology
7 College of Medicine, Department of Environmental Health, Environmental Genetics and Molecular Toxicology Division
8 Microbiology and Kluyver Centre for Genomics of Industrial Fermentation
9 CBS-KNAW Fungal Biodiversity Centre
10 Department of Biochemistry and Molecular and Cellular Biology and Institute of Biocomputation and Physics of Complex Systems
11 Medical Center, Department of Molecular Genetics and Microbiology
12 Forest Products Laboratory
13 Institute of Informatics [Warsaw]
14 GSALS - Graduate School of Agricultural and Life Sciences [UTokyo]
15 IAM - Interactions Arbres-Microorganismes
16 UHP - Université Henri Poincaré - Nancy 1
17 Molecular Wood Biotechnology and Technical Mycology, Büsgen-Institute
18 Department of Plant Biology
19 Facultad de Ciencias Biológicas, Departamento de Genética Molecular y Microbiología
20 ViPS - Viikki Plant Science Centre
21 Centre for Structural and Functional Genomics
22 Department of Biological Sciences
23 Biotechnology Center
24 Hudson Alpha Institute for Biotechnology
25 Department of Forest Mycology and Plant Pathology
26 Genetics and Microbiology Research Group
27 College of Science [Swansea]
2 Joint Genome Institute
3 Department of Plant Pathology
4 AFMB - Architecture et fonction des macromolécules biologiques
5 Centro de investigaciones biológicas
6 Department of Botany and Plant Pathology
7 College of Medicine, Department of Environmental Health, Environmental Genetics and Molecular Toxicology Division
8 Microbiology and Kluyver Centre for Genomics of Industrial Fermentation
9 CBS-KNAW Fungal Biodiversity Centre
10 Department of Biochemistry and Molecular and Cellular Biology and Institute of Biocomputation and Physics of Complex Systems
11 Medical Center, Department of Molecular Genetics and Microbiology
12 Forest Products Laboratory
13 Institute of Informatics [Warsaw]
14 GSALS - Graduate School of Agricultural and Life Sciences [UTokyo]
15 IAM - Interactions Arbres-Microorganismes
16 UHP - Université Henri Poincaré - Nancy 1
17 Molecular Wood Biotechnology and Technical Mycology, Büsgen-Institute
18 Department of Plant Biology
19 Facultad de Ciencias Biológicas, Departamento de Genética Molecular y Microbiología
20 ViPS - Viikki Plant Science Centre
21 Centre for Structural and Functional Genomics
22 Department of Biological Sciences
23 Biotechnology Center
24 Hudson Alpha Institute for Biotechnology
25 Department of Forest Mycology and Plant Pathology
26 Genetics and Microbiology Research Group
27 College of Science [Swansea]
Bernard Henrissat
- Fonction : Auteur
- PersonId : 833340
Annegret Kohler
- Fonction : Auteur
- PersonId : 741288
- IdHAL : annegret-kohler
- ORCID : 0000-0002-9575-9567
- IdRef : 161080588
Vincent Lombard
- Fonction : Auteur
- PersonId : 751357
- IdHAL : vincent-lombard
- ORCID : 0000-0002-9684-7067
Emmanuelle Morin
- Fonction : Auteur
- PersonId : 184935
- IdHAL : eamorin
- ORCID : 0000-0002-7268-972X
Claude Murat-Furminieux
- Fonction : Auteur
- PersonId : 740263
- IdHAL : claudemurat
- ORCID : 0000-0003-0685-7307
- IdRef : 084060603
Jan Stenlid
- Fonction : Auteur
- PersonId : 773261
- ORCID : 0000-0002-5344-2094
Francis Martin
- Fonction : Auteur
- PersonId : 1203753
- ORCID : 0000-0002-4737-3715
- IdRef : 059918268
Résumé
Wood is a major pool of organic carbon that is highly resistant to decay, owing largely to the presence of lignin. The only organisms capable of substantial lignin decay are white rot fungi in the Agaricomycetes, which also contains non-lignin-degrading brown rot and ectomycorrhizal species. Comparative analyses of 31 fungal genomes (12 generated for this study) suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species. Molecular clock analyses suggest that the origin of lignin degradation might have coincided with the sharp decrease in the rate of organic carbon burial around the end of the Carboniferous period.