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Journal Articles Journal of Computational Biology Year : 2015

Modeling alternate RNA structures in genomic sequences.

Abstract

We introduce the concept of RNA multistructures, which is a formal grammar-based framework specifically designed to model a set of alternate RNA secondary structures. Such alternate structures can either be a set of suboptimal foldings, or distinct stable folding states, or variants within an RNA family. We provide several such examples and propose an efficient algorithm to search for RNA multistructures within a genomic sequence.
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Dates and versions

hal-01228130 , version 1 (12-11-2015)

Identifiers

  • HAL Id : hal-01228130 , version 1
  • PUBMED : 25768235

Cite

Azadeh Saffarian, Mathieu Giraud, Hélène Touzet. Modeling alternate RNA structures in genomic sequences.. Journal of Computational Biology, 2015, 22 (3), pp.190-204. ⟨hal-01228130⟩
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