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Article Dans Une Revue Bioinformatics Année : 2003

Gene networks inference using dynamic bayesian networks

Bruno-Edouard Perrin
  • Fonction : Auteur
Samuele Bottani
  • Fonction : Auteur
Aurélien Mazurie
  • Fonction : Auteur

Résumé

This article deals with the identification of gene regulatory networks from experimental data using a statistical machine learning approach. A stochastic model of gene interactions capable of handling missing variables is pro posed. It can be described as a dynamic Bayesian network particularly well suited to tackle the stochastic nature of gene regulation and gene expression measurement. Parameters of the model are learned through a penalized likelihood maximization implemented through an extended version of EM algorithm. Our approach is tested against experimental data relative to the S.O.S. DNA Repair network of the Escherichia coli bacterium. It appears to be able to extract the main regulations between the genes involved in this network. An added missing variable is found to model the main protein of the network. Good prediction abilities on unlearned data are observed. These first results are very promising: they show the power of the learning algorithm and the ability of the model to capture gene interactions.

Dates et versions

hal-01176902 , version 1 (16-07-2015)

Identifiants

Citer

Bruno-Edouard Perrin, Liva Ralaivola, Florence d'Alché-Buc, Samuele Bottani, Aurélien Mazurie. Gene networks inference using dynamic bayesian networks. Bioinformatics, 2003, 19 (Suppl. 2), pp.138-148. ⟨10.1093/bioinformatics/btg1071⟩. ⟨hal-01176902⟩
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