The capacity of microphytobenthos to withstand the variable and extreme conditions of the intertidal environment, prone to cause photoinhibition, has been attributed to particularly efficient photoprotection. However, little is known regarding the capacity of this protection against photoinhibition or the mechanisms responsible for it. The present study quantified the photoprotective capacity and the extent of photoinhibition under excess light, estimated the contribution of vertical migration and the xanthophyll cycle to overall photoprotection, and evaluated the effects of photoacclimation. A new experimental protocol combined (1) chlorophyll fluorescence imaging, for the simultaneous measurement of replicates and experimental treatments, (2) specific inhibitors for vertical migration and for the xanthophyll cycle, to quantify the relative contribution of each process, and (3) recovery kinetics analysis of photosynthetic activity during light stress-recovery experiments, to distinguish rapidly reversible photochemical down-regulation from photoinhibition. The results show a high photoprotective capacity in 2 study periods, May and October, with photoinhibition rates below 20%. A clear change in photoacclimation state was observed, with acclimation to lower irradiances in autumn associated with higher susceptibility to photoinhibition. In May, vertical migration and the xanthophyll cycle provided comparable protection against photoinhibition; in October, the former predominated. The sum of their contributions was ~20% in both months, suggesting that other processes also contribute to photoprotection.