The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems. - Archive ouverte HAL Accéder directement au contenu
Article Dans Une Revue Chemical Society Reviews Année : 2014

The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.

Fabio Sterpone
Pierre Tuffery
Normand Mousseau
Marc Baaden

Résumé

The OPEP coarse-grained protein model has been applied to a wide range of applications since its first release 15 years ago. The model, which combines energetic and structural accuracy and chemical specificity, allows the study of single protein properties, DNA-RNA complexes, amyloid fibril formation and protein suspensions in a crowded environment. Here we first review the current state of the model and the most exciting applications using advanced conformational sampling methods. We then present the current limitations and a perspective on the ongoing developments.

Dates et versions

hal-01084631 , version 1 (19-11-2014)

Identifiants

Citer

Fabio Sterpone, Simone Melchionna, Pierre Tuffery, Samuela Pasquali, Normand Mousseau, et al.. The OPEP protein model: from single molecules, amyloid formation, crowding and hydrodynamics to DNA/RNA systems.. Chemical Society Reviews, 2014, pp.4871-93. ⟨10.1039/C4CS00048J⟩. ⟨hal-01084631⟩
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