Lossless seeds for searching short patterns with high error rates
Résumé
We address the problem of approximate pattern matching using the Levenshtein distance. Given a text T and a pattern P , find all
locations in T that differ by at most k errors from P . For that purpose, we propose a filtration algorithm that is based on a novel type of seeds,
combining exact parts and parts with a fixed number of errors. Experimental tests show that the method is specifically well-suited for short patterns with a large number of errors
Origine | Fichiers produits par l'(les) auteur(s) |
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