In the area of fuel cell research, most of the experimental techniques and equipments are still devoted to the analysis of single cells or very short stacks. However, the diagnosis of fuel cell stacks providing significant power levels is a critical aspect to be considered for the integration of fuel cell systems into real applications such as vehicles or stationary gensets. In this article, a new instrument developed in-lab is proposed in order to satisfy the requirements of electrochemical impedance studies to be led on large FC generators made of numerous individual cells. Moreover, new voltammetry protocols dedicated to PEMFC stack analysis are described. They enable for instance the study of membrane permeability and loss of platinum activity inside complete PEMFC assemblies. Keywords: PEMFC; Stack; Characterization; Electrochemical Impedance Spectroscopy; Cyclic Voltammetry; Linear Sweep Voltammetry.