This paper deals with joint stiffness identification with only actual motor force/torque data instead of motor and load positions. The parameters are estimated by using the DIDIM method which needs only input data. This method was previously validated on a 6 DOF rigid robot and is now extended to flexible systems. The criterion to be minimized is the quadratic error between the measured actual motor force/torque and the simulated one. The optimal parameters are calculated with the Nelder - Mead simplex algorithm. An experimental setup exhibits the experimental identification results and shows the effectiveness of our approach.