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Autre Publication Scientifique Année : 2011

How to accelerate genomic sequence alignment 4X using half an FPGA

Résumé

Designing FPGA-based accelerators is a difficult and time-consuming task that can be eased by High Level Synthesis Tools. To illustrate, we describe how a C-to-hardware methodology has been used to develop an efficient systolic array for the genomic sequence alignment problem. We also compare design performance with traditional HDL implementations.
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Dates et versions

hal-00637833 , version 1 (03-11-2011)

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  • HAL Id : hal-00637833 , version 1

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Alexandre Cornu, Steven Derrien, Dominique Lavenier. How to accelerate genomic sequence alignment 4X using half an FPGA. 2011. ⟨hal-00637833⟩
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