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Journal Articles Bioinformatics Year : 2006

HoSeql : automated homologous sequence identification in gene family databases

Abstract

We present a web service allowing to automatically assign sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified.

Dates and versions

hal-00427893 , version 1 (28-10-2009)

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Anne-Muriel Arigon Chifolleau, G. Perrière, Manolo Gouy. HoSeql : automated homologous sequence identification in gene family databases. Bioinformatics, 2006, 22 (14), pp.1786-1787. ⟨10.1093/bioinformatics/btl179⟩. ⟨hal-00427893⟩
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