Dynamic reconfiguration of FPGAs enables systems to adapt to changing demands. This paper concentrates on how to take into account specificities of partially reconfigurable components during the high level Adequation Algorithm Architecture process. We present a method which generates automatically the design for both partially and fixed parts of FPGAs. The runtime reconfiguration manager which monitors dynamic reconfigurations, uses prefetching technic to minimize reconfiguration latency of runtime reconfiguration. We demonstrate the benefits of this approach through the design of a dynamic reconfigurable MC-CDMA transmitter implemented on a Xilinx Virtex2.