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Marker-free plasmids for biotechnological applications – implications and perspectives

Pedro Oliveira , Juergen Mairhofer
Trends in Biotechnology, 2013, 31 (9), pp.539-547. ⟨10.1016/j.tibtech.2013.06.001⟩
Article dans une revue istex hal-04328020v1
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Mobility of Plasmids

C. Smillie , M. P. Garcillan-Barcia , M. V. Francia , Eduardo P.C. Rocha , F. de La Cruz
Microbiology and Molecular Biology Reviews, 2010, 74 (3), pp.434 - 452. ⟨10.1128/MMBR.00020-10⟩
Article dans une revue pasteur-01374958v1
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1926–2016: 90 Years of listeriology

Alice Lebreton , Fabrizia Stavru , Sylvain Brisse , Pascale Cossart
Microbes and Infection, 2016, 18 (12), pp.711 - 723. ⟨10.1016/j.micinf.2016.10.009⟩
Article dans une revue hal-01400517v2
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Multicenter Outbreak of Infections by Saprochaete clavata , an Unrecognized Opportunistic Fungal Pathogen

Sophie Vaux , Alexis Criscuolo , Marie Desnos-Ollivier , Laure Diancourt , Chloé Tarnaud , et al.
mBio, 2014, 5 (6), pp.e02309-14. ⟨10.1128/mBio.02309-14⟩
Article dans une revue hal-01484251v1

Biofilms structural diversity of 100 strains of the food-borne pathogen Listeria monocytogenes

Morgan Guilbaud , Pascal Piveteau , Sylvain Brisse , Romain Briandet
BIOFILMS 5, Dec 2012, PARIS, France
Poster de conférence hal-01570155v1
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BioConvert: a comprehensive format converter for life sciences

Hugo Caro , Sulyvan Dollin , Anne Biton , Bryan Brancotte , Dimitri Desvillechabrol , et al.
NAR Genomics and Bioinformatics, 2023, 5 (3), ⟨10.1093/nargab/lqad074⟩
Article dans une revue pasteur-04279554v2
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Molecular epidemiology of carbapenem non-susceptible Acinetobacter baumannii in France.

Katy Jeannot , Laure Diancourt , Sophie Vaux , Michelle Thouverez , Amandina Ribeiro , et al.
PLoS ONE, 2013, 9 (12), pp.e115452. ⟨10.1371/journal.pone.0115452⟩
Article dans une revue hal-01114942v1
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Horizontal gene transfer among host-associated microbes

Jorge Moura de Sousa , Marta Lourenço , Isabel Gordo
Cell Host & Microbe, 2023, 31 (4), pp.513 - 527. ⟨10.1016/j.chom.2023.03.017⟩
Article dans une revue hal-04604566v1
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PanACoTA: a modular tool for massive microbial comparative genomics

Amandine Perrin , Eduardo P. C. Rocha
NAR Genomics and Bioinformatics, 2021, 3 (1), pp.lqaa106. ⟨10.1093/nargab/lqaa106⟩
Article dans une revue hal-03357352v1
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Latent evolution of biofilm formation depends on life-history and genetic background

Amandine Nucci , Eduardo P C Rocha , Olaya Rendueles
npj Biofilms and Microbiomes, 2023, 9 (1), pp.53. ⟨10.1038/s41522-023-00422-3⟩
Article dans une revue pasteur-04177373v1
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Transient Hypermutagenesis Accelerates the Evolution of Legume Endosymbionts following Horizontal Gene Transfer

Philippe Remigi , Delphine Capela , Camille Clerissi , Léna Tasse , Rachel Torchet , et al.
PLoS Biology, 2014, 12 (9), ⟨10.1371/journal.pbio.1001942⟩
Article dans une revue pasteur-01374959v1
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Experimental Evolution as a Tool to Investigate Natural Processes and Molecular Functions

Philippe Remigi , Catherine Masson-Boivin , Eduardo P C Rocha
Trends in Microbiology, 2019, 27 (7), pp.623-634. ⟨10.1016/j.tim.2019.02.003⟩
Article dans une revue hal-02329724v1
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The chromosomal organization of horizontal gene transfer in bacteria

Pedro H. Oliveira , Marie Touchon , Jean Cury , Eduardo P C Rocha
Nature Communications, 2017, 8 (1), pp.841. ⟨10.1038/s41467-017-00808-w⟩
Article dans une revue hal-04325283v1
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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

Sebastien Breurec , Alexis Criscuolo , Laure Diancourt , Olaya Rendueles , Mathias Vandenbogaert , et al.
Scientific Reports, 2016, 6, pp.30379. ⟨10.1038/srep30379⟩
Article dans une revue hal-02613124v1
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Phages and their satellites encode hotspots of antiviral systems

François Rousset , Florence Depardieu , Solange Miele , Julien Dowding , Anne-Laure Laval , et al.
Cell Host & Microbe, 2022, 30 (5), pp.740 - 753.e5. ⟨10.1016/j.chom.2022.02.018⟩
Article dans une revue pasteur-04075930v1
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Structural and Genomic Evolution of RRNPPA Systems and Their Pheromone Signaling

Alonso Felipe-Ruiz , Alberto Marina , Eduardo P C Rocha
mBio, 2022, 13 (6), pp.e0251422. ⟨10.1128/mbio.02514-22⟩
Article dans une revue pasteur-03952614v1
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A widespread family of phage-inducible chromosomal islands only steals bacteriophage tails to spread in nature

Nasser Alqurainy , Laura Miguel-Romero , Jorge Moura de Sousa , John Chen , Eduardo P.C. Rocha , et al.
Cell Host & Microbe, 2023, 31 (1), pp.69-82.e5. ⟨10.1016/j.chom.2022.12.001⟩
Article dans une revue pasteur-03952543v2
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A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria

Kasie Raymann , Louis-Marie Bobay , Thomas G. Doak , Michael Lynch , Simonetta Gribaldo
G3, 2013, 3 (3), pp.505-516. ⟨10.1534/g3.112.005231⟩
Article dans une revue hal-01579027v1
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How capsules protect the cell, shape genetic exchanges and drive bacterial evolution

Matthieu Haudiquet
Human health and pathology. Université Paris Cité, 2022. English. ⟨NNT : 2022UNIP7137⟩
Thèse tel-04076297v2
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Role of Klebsiella pneumoniae Type VI secretion system (T6SS) in long-term gastrointestinal colonization

Thomas Merciecca , Stéphanie Bornes , Laurence Nakusi , Sébastien Theil , Olaya Rendueles , et al.
Scientific Reports, 2022, 12 (1), pp.16968. ⟨10.1038/s41598-022-21396-w⟩
Article dans une revue pasteur-03809977v1
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A Single Amino Acid Substitution Changes the Self-Assembly Status of a Type IV Piliation Secretin

N. N. Nickerson , S. S. Abby , E. P. C. Rocha , M. Chami , A. P. Pugsley
Journal of Bacteriology, 2012, 194 (18), pp.4951 - 4958. ⟨10.1128/JB.00798-12⟩
Article dans une revue pasteur-01374952v1
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Exploring the diversity of listeria monocytogenes biofilm architecture by high-throughput confocal laser scanning microscopy and the predominance of the honeycomb-like morphotype

Morgan Guilbaud , Pascal Piveteau , Mickaël Desvaux , Sylvain Brisse , Romain Briandet
Applied and Environmental Microbiology, 2015, 81 (5), pp.1813-1819. ⟨10.1128/AEM.03173-14⟩
Article dans une revue hal-01204409v1
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Phage-Plasmids Spread Antibiotic Resistance Genes through Infection and Lysogenic Conversion

Eugen Pfeifer , Rémy A. Bonnin , Eduardo Rocha
mBio, 2022, Ahead of print. ⟨10.1128/mbio.01851-22⟩
Article dans une revue pasteur-03818031v1
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes

Alexandra Moura , Alexis Criscuolo , Hannes Pouseele , Mylène M. Maury , Alexandre Leclercq , et al.
Nature Microbiology, 2016, 2, pp.16185. ⟨10.1038/nmicrobiol.2016.185⟩
Article dans une revue pasteur-01415883v1
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Phage-inducible chromosomal minimalist islands (PICMIs), a novel family of small marine satellites of virulent phages

Rubén Barcia-Cruz , David Goudenège , Jorge Moura de Sousa , Damien Piel , Martial Marbouty , et al.
Nature Communications, 2024, 15 (1), pp.664. ⟨10.1038/s41467-024-44965-1⟩
Article dans une revue hal-04413133v1

Experimental evolution of rhizobia may lead to either extra- or intracellular symbiotic adaptation depending on the selection regime

Marta Marchetti , Camille Clerissi , Yasmine Yousfi , Carine Gris , Olivier Bouchez , et al.
Molecular Ecology, 2017, 26 (7), pp.1818-1831. ⟨10.1111/mec.13895⟩
Article dans une revue hal-01607703v1
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Selection for the bacterial capsule in the absence of biotic and abiotic aggressions depends on growth conditions

Amandine Buffet , Eduardo P. C. Rocha , Olaya Rendueles
2020
Pré-publication, Document de travail pasteur-02991089v1
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Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements

Aude Bernheim , David Bikard , Marie Touchon , Eduardo Rocha
Nucleic Acids Research, 2020, 48, pp.748 - 760. ⟨10.1093/nar/gkz1091⟩
Article dans une revue pasteur-02626502v1
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Bacillus subtilis, the model Gram-positive bacterium: 20years of annotation refinement

Rainer Borriss , Antoine Danchin , Colin R. Harwood , Claudine Médigue , Eduardo P. C. Rocha , et al.
Microbial Biotechnology, 2018, 11 (1), pp.3-17. ⟨10.1111/1751-7915.13043⟩
Article dans une revue cea-02291345v1

Identification of Protein Secretion Systems in Bacterial Genomes Using MacSyFinder.

Sophie S. Abby , Eduardo P C Rocha
Methods in Molecular Biology, 2018, Bacterial protein secretion systems, 1615, pp.1-21. ⟨10.1007/978-1-4939-7033-9_1⟩
Article dans une revue hal-01677379v1