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authIdHal_s : flora-jay
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Fast Inference of Individual Admixture Coefficients Using Geographic Data

Kevin Caye , Flora Jay , Olivier J.J. Michel , Olivier François
Annals of Applied Statistics, 2018, 12 (1), pp.586-608. ⟨10.1214/17-AOAS1106⟩
Journal articles hal-01676712v1

SPI-DNA: End-to-end Deep Learning Approach for Demographic History Inference

Théophile Sanchez , Guillaume Charpiat , Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering, Sep 2017, Orsay, France
Conference papers hal-01679385v1

An Approximate Bayesian Computation approach to reconstruct demography from sequence data

Simon S. Boitard , Flora Jay , Frédéric Austerlitz
Annual Meeting Society for Molecular Biology and Evolution (SMBE), Jul 2015, Vienne, Austria
Conference papers hal-02799621v1

Anisotropic Isolation by Distance: The Main Orientations of Human Genetic Differentiation.

Flora Jay , Per Sjödin , Mattias Jakobsson , Michael G B Blum
Molecular Biology and Evolution, 2012, epub ahead of print. ⟨10.1093/molbev/mss259⟩
Journal articles hal-00775881v1
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Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach.

Simon Boitard , Willy Rodríguez , Flora Jay , Stefano Mona , Frederic Austerlitz
conférence Jaques Monod "Coalescence des approches théoriques et expérimentales en génomique évolutive et biologie des systèmes", 2016, Roscoff, France
Conference papers hal-01604024v1
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Estimation de tailles efficaces variables dans le temps à partir de données génomiques actuelles

Flora Jay , Simon S. Boitard
Réseau Ressources Génétiques Animales - Taille efficace et dépression de consanguinité : variables essentielles de biodiversité pour la gestion des populations domestiques et sauvages, May 2016, Paris, France
Conference papers hal-02793211v1
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Simulation of bacterial populations with SLiM

Jean Cury , Benjamin C Haller , Guillaume Achaz , Flora Jay
Peer Community Journal, 2022, ⟨10.24072/pcjournal.72⟩
Journal articles hal-03152153v3
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POPS: A Software for Prediction of Population Genetic Structure Using Latent Regression Models Olivier François Eric Y. Durand

Flora Jay , Olivier François , Eric y Durand , Michael Gb Blum
Journal of Statistical Software, 2015, 68 (9), ⟨10.18637/jss.v068.i09⟩
Journal articles hal-01256474v1

Reconstructing past history from whole-genomes: an ABC approach handling recombining data.

Flora Jay , Simon S. Boitard , Frederic Austerlitz
European Mathematical Genetics Meeting, Apr 2017, Tartu, Estonia
Conference papers hal-01679379v1
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Méthodes bayésiennes en génétique des populations : relations entre structure génétique des populations et environnement

Flora Jay
Médecine humaine et pathologie. Université de Grenoble, 2011. Français. ⟨NNT : 2011GRENS026⟩
Theses tel-00648601v1
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Differences in local population history at the finest level: the case of the Estonian population

Vasili Pankratov , Francesco Montinaro , Alena Kushniarevich , Georgi Hudjashov , Flora Jay , et al.
European Journal of Human Genetics, 2020, ⟨10.1038/s41431-020-0699-4⟩
Journal articles hal-02942330v1

Inference of the Cultural Transmission of Reproductive Success from human genomic data: ABC and machine learning methods

Arnaud Quelin , Jérémy Guez , Ferdinand Petit , Flora Jay , Frederic Austerlitz
Junior Conference on DataScience and Engeneering 2022, Sep 2022, Palaiseau, France
Poster communications hal-04011855v1
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Combiner arbres phylogénétiques et visualisation d'ensembles

Jean-Baptiste Lamy , Flora Jay
Atelier Visualisation d'informations, interaction et fouille de données, Jan 2020, Bruxelles, Belgique
Conference papers hal-02968296v1

Inferring demographic history from whole genome using Approximate Bayesian Computation

Simon S. Boitard , Flora Jay , Frédéric Austerlitz
Annual meeting of the American Society of Human Genetics (ASHG), Oct 2014, San Diego, United States. 2014
Poster communications hal-02793071v1

End-to-End Deep Learning Approach for Demographic History Inference

Théophile Sanchez , Guillaume Charpiat , Flora Jay
Human Evolution: Fossils, Ancient and Modern Genomes 2017, Nov 2017, Hinxton, Cambridge, United Kingdom
Poster communications hal-01823543v1
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An ABC method for whole-­genome sequence data: inferring paleolithic and neolithic human expansions

Flora Jay , Simon Boitard , Frédéric Austerlitz​
2018
Preprints, Working Papers, ... hal-01896856v1

Predictions of native American population structure using linguistic covariates in a hidden regression framework.

Flora Jay , Olivier François , Michael G B Blum
PLoS ONE, 2011, 6 (1), pp.e16227. ⟨10.1371/journal.pone.0016227⟩
Journal articles hal-00655073v1

An ABC Method for Whole-Genome Sequence Data: Inferring Paleolithic and Neolithic Human Expansions

Flora Jay , Simon Boitard , Frédéric Austerlitz
Molecular Biology and Evolution, 2019, 36 (7), pp.1565-1579. ⟨10.1093/molbev/msz038⟩
Journal articles hal-02274331v1
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Inference of the Cultural Transmission of Reproductive Success from human genomic data: ABC and machine learning methods

Arnaud Quelin , Jérémy Guez , Ferdinand Petit , Flora Jay , Flora Jay , et al.
Alphy/AIEM 2023 - Rencontres Alphy & AIEM, Jan 2023, Grenoble, France
Poster communications hal-03960408v1

A quantitative theory for genomic offset statistics

Clément Gain , Bénédicte Rhoné , Philippe Cubry , Israfel Salazar , Florence Forbes , et al.
2023
Preprints, Working Papers, ... hal-04049450v1
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Insights into Persistence Mechanisms of a Zoonotic Virus in Bat Colonies Using a Multispecies Metapopulation Model

Margarita Pons-Salort , Jordi Serra-Cobo , Flora Jay , Marc Ló Pez-Roig , Rachel Lavenir , et al.
PLoS ONE, 2014, 9 (4), pp.e95610. ⟨10.1371/journal.pone.0095610⟩
Journal articles hal-01272324v1
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Dimension reduction adapted to paleogenomics

Séverine Liégeois , Olivier François , Flora Jay
Paris-Saclay Junior Conference on Data Science and Engineering, Sep 2018, Orsay, France
Poster communications hal-01978650v1
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dnadna: a deep learning framework for population genetics inference

Théophile Sanchez , Erik Madison Bray , Pierre Jobic , Jérémy Guez , Anne-Catherine Letournel , et al.
Bioinformatics, In press, ⟨10.1093/bioinformatics/btac765⟩
Journal articles hal-03352910v4

Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations

Michael Martin , Flora Jay , Sergi Castellano , Montgomery Slatkin
Molecular Ecology, 2017, 26 (16), pp.4145 - 4157. ⟨10.1111/mec.14188⟩
Journal articles hal-01676698v1

Inference of past historical events using ABC and MCMC methods on population genomics data sets. Applications to human populations

Frederic Austerlitz , Carla Aimé , Flora Jay
ESEB 2017 - Congress of the European Society for Evolutionary Biology, Aug 2017, Groningen, Netherlands
Conference papers hal-01789205v1
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Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach

Simon Boitard , Willy Rodríguez , Flora Jay , Stefano Mona , Frédéric Austerlitz
PLoS Genetics, 2016, 12 (3), pp.e1005877. ⟨10.1371/journal.pgen.1005877⟩
Journal articles hal-01310742v1

Cultural transmission of reproductive success impacts genomic diversity, coalescent tree topologies and demographic inferences

Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance , et al.
Journal articles hal-03875721v1
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Factor analysis of ancient population genomic samples

Olivier François , Flora Jay
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18335-6⟩
Journal articles hal-02942333v1

Genomic variation in seven Khoe-San groups reveals adaptation and complex African history.

Carina M Schlebusch , Pontus Skoglund , Per Sjödin , Lucie M Gattepaille , Dena Hernandez , et al.
Science, 2012, 338 (6105), pp.374-9. ⟨10.1126/science.1227721⟩
Journal articles hal-00775886v1

Modèles à variables latentes en génétique des populations

Flora Jay , Michael G B Blum , Olivier François
Journal de la Société Française de Statistique, 2011, 152, pp.3-20
Journal articles hal-00861855v1