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authIdHal_s : eric-rivals

Purification Process Of Nascent DNA

Marcel Méchali , Christelle Cayrou , Philippe Coulombe , Eric Rivals
United States, Patent n° : US 61/238 315 - WO2011023827 (A1). 2010
Patents hal-03102676v1
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Detecting Microsatellites within Genomes: No Exact Solution ?

Sébastien Leclercq , Philippe Jarne , Eric Rivals
Journées Ouvertes Biologie, Informatique, Mathématiques (JOBIM), Jul 2006, Bordeaux, France. , pp.11-12, 2006
Poster communications lirmm-00120204v1
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Hardness of Optimal Spaced Seed Design

François Nicolas , Eric Rivals
CPM: Combinatorial Pattern Matching, Jun 2005, Jeju City, South Korea. pp.144-155, ⟨10.1007/11496656_13⟩
Conference papers lirmm-00106448v1
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Histoires de Duplication et Répétitions en Tandem

Eric Rivals
ALBIO, Montpellier, France. pp.P nd
Conference papers lirmm-00191527v1
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Analysis of four polymorphic minisatellites suggests frequent genetic exchanges among House Mouse subspecies

Eric Rivals , François Bonhomme , Annie Orth , Gemma R Grant , Alec J Jeffreys , et al.
JOBIM'07 : Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2007, Marseille, pp.123-124
Conference papers lirmm-00195503v1
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Population genomics of picophytoplankton unveils novel chromosome hypervariability

Romain Blanc-Mathieu , Marc Krasovec , Maxime Hebrard , Sheree Yau , Elodie Desgranges , et al.
Science Advances , 2017, 3 (7), Non paginé. ⟨10.1126/sciadv.1700239⟩
Journal articles lirmm-01842137v1
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Rearrangement Scenarios Guided by Chromatin Structure

Sylvain Pulicani , Pijus Simonaitis , Eric Rivals , Krister M. Swenson
RECOMB-CG: Comparative Genomics, Oct 2017, Barcelona, Spain. pp.141-155, ⟨10.1007/978-3-319-67979-2_8⟩
Conference papers hal-01791974v1

The power of greedy algorithms for approximating Max-ATSP, Cyclic Cover, and superstrings

Bastien Cazaux , Eric Rivals
Discrete Applied Mathematics, 2016, 212, pp.48-60. ⟨10.1016/j.dam.2015.06.003⟩
Journal articles lirmm-01286943v1
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Exploring the transcriptional landscape of gonadotroph tumor microenvironment with single cell RNA-seq

Benoît Aliaga , Julie Ripoll , Marie Chanal , Hector Hernandez-Vargas , Emmanuel Jouanneau , et al.
SFBI. JOBIM 2021 - 21èmes Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2021, Paris, France. , 2021, Actes des Journées Ouvertes en Biologie, Informatique et Mathématiques
Poster communications lirmm-03544671v1
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Scalable and Versatile k-mer Indexing for High-Throughput Sequencing Data

Niko Välimäki , Eric Rivals
ISBRA'2013: International Symposium on Bioinformatics Research and Applications, May 2013, Charlotte, NC, United States. pp.237-248
Conference papers lirmm-00806103v1

Analysis of genomic data from high throughput sequencing: concepts and basic methods

Eric Rivals
Palaeogenomics Summer School, Oct 2011, Cargese, France
Conference papers lirmm-00832551v1
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Approximation of Greedy Algorithms for Max-ATSP, Maximal Compression, Maximal Cycle Cover, and Shortest Cyclic Cover of Strings

Bastien Cazaux , Eric Rivals
PSC: Prague Stringology Conference, Czech Technical University in Prague, Sep 2014, Prague, Czech Republic. pp.148-161
Conference papers lirmm-01100683v1
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Etude de l’évolution de la diversité génétique intrahôte du virus Puumala lors d’infections expérimentales

Caroline Tatard , Maxime Galan , Bastien Cazaux , Adelaïde Dubois , Sarah Madrières , et al.
20èmes Journées Francophones de Virologie, Mar 2018, Paris, France. 2018
Poster communications hal-02789410v1
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AquaPony: Visualization and interpretation of phylogeographic information on phylogenetic trees

Bastien Cazaux , Guillaume G. Castel , Eric Rivals
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2018, Marseilles, France. 2018, Journées Ouvertes en Biologie, Informatique et Mathématiques : JOBIM 2018 Abstracts
Poster communications hal-02733925v1
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High performance text indexing and applications in life sciences

Eric Rivals
UK-France Bilateral International Meeting on High Performance Computing and Biomathematics, Feb 2019, Chicheley, United Kingdom
Conference papers lirmm-02093450v1
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Evolutionary Dynamics of the Restorer and a non-restorer Allelic Rfo Locus.

José R. Hernández Mora , Eric Rivals , Hakim Mireau , Françoise Budar
SFBV'07: VIIe Colloque National de la Société Française de Biologie Végétale, Sep 2007, Versailles, France. pp.113
Conference papers lirmm-00203886v1
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Modelling Spatio-temporal Dynamic of Ribosome During Translation

Carole Chevalier , Jean-Charles Walter , John Palmeri , Andrea Parmeggiani , Frederic Geniet , et al.
7ème Journées Scientifiques du LabEx NUMEV, Nov 2018, Montpellier, France
Poster communications hal-01950298v1
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Investigating the transcriptomic repertoire based on High Throughput Sequencing data

Eric Rivals
Colloque 2009 du GDR de Bioinformatique Moléculaire, Nov 2009, Paris, France
Conference papers lirmm-00833124v1
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Genome-Scale Analysis of Metazoan Replication Origins Reveals their Organization in Specific but Flexible Sites Defined by Conserved Features

Christelle Cayrou , Philippe Coulombe , Alice Vigneron , Slavica Stanojcic , Olivier Ganier , et al.
Genome Research, 2011, 21 (9), pp.1438-1449. ⟨10.1101/gr.121830.111⟩
Journal articles lirmm-00631491v1
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An improved genome of the model marine alga [i]Ostreococcus tauri[/i] unfolds by assessing Illumina [i]de novo[/i] assemblies

Romain Blanc Mathieu , Bram Verhelst , Evelyne Derelle , Stephane Rombauts , Francois-Yves Bouget , et al.
BMC Genomics, 2014, 15, pp.1-11. ⟨10.1186/1471-2164-15-1103⟩
Journal articles hal-01130514v1
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Search algorithms for dinucleotide Position Weight Matrices

Marie Mille , Julie Ripoll , Bastien Cazaux , Eric Rivals
Société Française de Bioinformatique (S.F.B.I.). Journées Ouvertes en Biologie, Informatique et Mathématiques 2021, Jul 2021, Paris, France. , pp.100, 2021, Actes des Journées Ouvertes en Biologie, Informatique et Mathématiques 2021
Poster communications lirmm-03442434v1
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Greedy-reduction from Shortest Linear Superstring to Shortest Circular Superstring

Bastien Cazaux , Eric Rivals
2021
Preprints, Working Papers, ... lirmm-03442437v1

Comparison of Minisatellites

Sèverine Bérard , Eric Rivals
Journal of Computational Biology, 2003, 10 (3-4), pp. 357-372. ⟨10.1145/565196.565205⟩
Journal articles lirmm-00269555v1

Complexities of the Centre and Median String Problems

François Nicolas , Eric Rivals
CPM: Combinatorial Pattern Matching, Jun 2003, Morelia, Mexico. pp.315-327
Conference papers lirmm-00269556v1
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Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity

Nicolas Philippe , Anthony Boureux , Laurent Brehelin , Jorma Tarhio , Thérèse Commes , et al.
Nucleic Acids Research, 2009, 37 (15 e104), pp.11. ⟨10.1093/nar/gkp492⟩
Journal articles lirmm-00415899v1
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CRAC: an integrated approach to the analysis of RNA-seq reads

Nicolas Philippe , Mikaël Salson , Thérèse Commes , Eric Rivals
Genome Biology, 2013, 14 (3), pp.R30. ⟨10.1186/gb-2013-14-3-r30⟩
Journal articles inserm-00850972v1
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From Indexing Data Structures to de Bruijn Graphs

Bastien Cazaux , Thierry Lecroq , Eric Rivals
[Research Report] RR-14004, LIRMM. 2014
Reports lirmm-00950983v2
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Digital gene expression data, cross-species conservation and noncoding RNA

Nicolas Philippe , Florence Ruffle , Elias Bou Samra , Anthony Boureux , Thérèse Commes , et al.
EMBnet.journal, 2011, 17 (Supplement B), pp.1. ⟨10.14806/ej.17.B.288⟩
Journal articles lirmm-00757989v1
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A new type of Hidden Markov Models to predict complex domain architecture in protein sequences

Raluca Uricaru , Laurent Brehelin , Eric Rivals
JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jul 2007, Marseille, France. pp.97-102
Conference papers lirmm-00195493v1
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A linear time algorithm for Shortest Cyclic Cover of Strings

Bastien Cazaux , Eric Rivals
[Research Report] IBC; LIRMM. 2015
Reports lirmm-01240278v1