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Algorithmic investigations of the dynamics of species interactions

Yishu Wang
Bioinformatics [q-bio.QM]. Université de Lyon, 2021. English. ⟨NNT : 2021LYSE1196⟩
Theses tel-03499342v2
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Capybara: equivalence ClAss enumeration of coPhylogenY event-BAsed ReconciliAtions

Yishu Wang , Arnaud Mary , Marie-France Sagot , Blerina Sinaimeri
Bioinformatics, 2020, 36 (14), pp.4197-4199. ⟨10.1093/bioinformatics/btaa498⟩
Journal articles hal-02917341v1
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Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations

Yishu Wang , Arnaud Mary , Marie-France Sagot , Blerina Sinaimeri
WABI 2021 - 21st International Workshop on Algorithms in Bioinformatics, Aug 2021, Chicago, United States. pp.1-18, ⟨10.4230/LIPIcs.WABI.2021.3⟩
Conference papers hal-03295799v1
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Efficiently sparse listing of classes of optimal cophylogeny reconciliations

Yishu Wang , Marie-France Sagot , Arnaud Mary , Blerina Sinaimeri
Algorithms for Molecular Biology, 2022, 17 (1), pp.1-16. ⟨10.1186/s13015-022-00206-y⟩
Journal articles hal-03576371v1
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A General Framework for Enumerating Equivalence Classes of Solutions

Yishu Wang , Arnaud Mary , Marie-France Sagot , Blerina Sinaimeri
ESA 2021 - 29th Annual European Symposium on Algorithms, Sep 2021, Virtual, Portugal. pp.1-14, ⟨10.4230/LIPIcs.ESA.2021.80⟩
Conference papers hal-03333503v1