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Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository

Baptiste Rousseau , Véronique Jamilloux , Thomas Denecker , Hélène Chiapello , Ariane Bize
JOBIM 2023, Jun 2023, Nancy, France.
Poster communications hal-04139284v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation

Joelle J. Amselem , Michael Alaux , Nathalie Choisne , Nicolas Lapalu , Baptiste Brault , et al.
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2011, Paris, France. 2 p
Conference papers hal-01019754v1

Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer , Karl G. Kugler , Simen R. Sandve , Bujie Zhan , Heidi Rudi , et al.
Science, 2014, 345 (6194), pp.287-287. ⟨10.1126/science.1250091⟩
Journal articles hal-02889033v1
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A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe , et al.
22. Conference on Plant and Animal Genome, Jan 2014, San Diego, United States
Conference papers hal-02742303v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe , et al.
Science, 2014, 345 (6194), ⟨10.1126/science.1249721⟩
Journal articles hal-02638189v1

IWGSC Sequence repository at URGI: New features and blast tool

Michael Alaux , Françoise Alfama Depauw , Loïc Couderc , Véronique Jamilloux , Claire Guerche , et al.
PAG XXII - Plant and Animal Genome, Jan 2014, San Diego, United States
Conference papers hal-02801480v1
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A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea

Jérémy Berthelier , Nathalie Casse , Nicolas Daccord , Véronique Jamilloux , Bruno Saint-Jean , et al.
BMC Genomics, 2018, 19 (1), pp.1-14. ⟨10.1186/s12864-018-4763-1⟩
Journal articles hal-02627049v1
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De novo annotation of transposable elements : tackling the fat genome issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville
Proceedings of the IEEE, 2017, 105 (3), pp.474-481. ⟨10.1109/JPROC.2016.2590833⟩
Journal articles hal-02622009v1
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CAULIFINDER

Florian Maumus , Véronique Jamilloux , Héléna Vassilieff , Sana Haddad
Software hal-03906699v1

IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequence

Michael Alaux , Françoise Alfama-Depauw , Véronique Jamilloux , Raphaël Flores , Daphné Verdelet , et al.
PAG XXI - Plant and Animal Genome, Jan 2013, San Diego, United States
Conference papers hal-02804578v1

Development of genomic resources to study the structure, function and evolution of the oak genome

Christophe Plomion , Joelle J. Amselem , Jean-Marc Aury , Catherine Bodenes , Emilie Chancerel , et al.
IUFRO working group "Genetics of Quercus and Nothofagus", Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers hal-01019850v1
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Organization and evolution of transposable elements along the bread wheat chromosome 3B

Josquin Daron , Natasha Glover , Lise Pingault , Sébastien Theil , Véronique Jamilloux , et al.
Genome Biology, 2014, 15 (12), pp.1-15. ⟨10.1186/s13059-014-0546-4⟩
Journal articles hal-02630315v1

Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their Distribution in Different Climate Zones along Elevation

Francesco Dal Grande , Véronique Jamilloux , Nathalie Choisne , Anjuli Calchera , Gregor Rolshausen , et al.
Biology, 2022, 11 (1), pp.24. ⟨10.3390/biology11010024⟩
Journal articles hal-03508049v1

A reference sequence of wheat chromosome 3B

Frédéric Choulet , Adriana A. Alberti , Sébastien Theil , Natasha Marie Glover , Valérie Barbe , et al.
3. Plant Genomics Congress, May 2015, London, United Kingdom
Conference papers hal-02740971v1

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

. International Wheat Genome Sequencing Consortium (iwgsc) , Michael M. Alaux , Françoise F. Alfama-Depauw , Frédéric Choulet , Loïc Couderc , et al.
Science, 2014, 345 (6194), pp.1251788. ⟨10.1126/science.1251788⟩
Journal articles hal-02640843v1
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Use cases and improvements of REPET package : pipeline and tools to identify and annotate TEs in genomic sequences

Véronique Jamilloux , Olivier Inizan , Sandie Arnoux , Timothée Flutre , Claire Hoede , et al.
17. Congrès National des Elements Transposables, Jul 2011, Lyon, France. 2011
Poster communications hal-01190364v1

REPET v3.0

Véronique Jamilloux , Françoise Alfama-Depauw , Johann Confais , Mariène Wan , Agnes Baud , et al.
2019
Software hal-02790461v1
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Mining plant genomic and genetic data using the GnpIS information system

Anne-Francoise Adam-Blondon , Michael Alaux , Sophie Durand , Thomas Letellier , Guillaume Merceron , et al.
Aalt D.J van Dijk. Plant Genomics Databases. Methods and Protocols, 1533, Springer, 2017, Methods in Molecular Biology, 978-1-4939-6658-5. ⟨10.1007/978-1-4939-6658-5_5⟩
Book sections hal-03206731v1
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Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila

Gabriel Rech , Santiago Radío , Sara Guirao-Rico , Laura Aguilera , Vivien Horvath , et al.
Nature Communications, 2022, 13 (1), pp.1-16. ⟨10.1038/s41467-022-29518-8⟩
Journal articles hal-03807727v1

Ancient hybridizations among the ancestral genomes of bread wheat

T. Marcussen , S. Sandve , L. Heier , M. Spannagl , M. Pfeifer , et al.
Science, 2014, 345 (6194), pp.1250092-1250092. ⟨10.1126/science.1250092⟩
Journal articles hal-02889053v1
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?

Michael M. Alaux , Frédéric Choulet , Loïc Couderc , Françoise F. Alfama-Depauw , Véronique Jamilloux , et al.
PAG XXIII - Plant and Animal Genome Conference, Jan 2015, San Diego, United States
Conference papers hal-02741662v1

Biodiversity of domestic birds

Michèle Tixier-Boichard , Gérard Coquerelle , Marie-Hélène Durand Tardif , D. Planchenault , Véronique Jamilloux , et al.
British Poultry Science, 2001, 42 (sp.), pp.S29-S31
Journal articles hal-02673688v1

IWGSC Sequence repository : new data and browsers

Michael Alaux , Loïc Couderc , Françoise Alfama Depauw , Véronique Jamilloux , Claire Guerche , et al.
12. IWGS (International Wheat Genetics Symposium), Kyoto University [Kyoto] (KU). JPN., Sep 2013, Yokohama, Japan
Conference papers hal-02806070v1
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PASTEC: an automatic transposable element classification tool

Claire Hoede , Sandie Arnoux , Mark Moissette , Timothée Chaumier , Olivier Inizan , et al.
PLoS ONE, 2014, 9 (5), pp.e91929. ⟨10.1371/journal.pone.0091929⟩
Journal articles hal-02639360v1

IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat

Michael Alaux , Thomas Letellier , Françoise Alfama-Depauw , Véronique Jamilloux , Jane Rogers , et al.
PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States
Conference papers hal-01266518v1

La biodiversité chez les oiseaux domestiques

Michèle Tixier-Boichard , Gérard Coquerelle , Marie-Hélène Durand Tardif , Dominique Planchenault , Véronique Jamilloux , et al.
4. Journées de la Recherche Avicole, Mar 2001, Nantes, France
Conference papers hal-02760752v1

De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue

Véronique Jamilloux , Josquin Daron , Frédéric Choulet , Hadi Quesneville
Proceedings of the IEEE, 2017, 105 (5), pp.978-978. ⟨10.1109/JPROC.2017.2680218⟩
Journal articles hal-02618951v1
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RepetDB: a unified resource for transposable element references

Joëlle Amselem , Guillaume Cornut , Nathalie Choisne , Michael Alaux , Françoise Alfama Depauw , et al.
Mobile DNA, 2019, 10, pp.1-8. ⟨10.1186/s13100-019-0150-y⟩
Journal articles hal-02625212v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives

Michael Alaux , Jane Rogers , Thomas Letellier , Raphaël Flores , Cyril Pommier , et al.
PAG XXVI - Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.32 slides
Conference papers hal-02788401v1

http://www.brg.prd.fr

Véronique Jamilloux
2005
Software hal-02826884v1