Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository
Baptiste Rousseau
,
Véronique Jamilloux
,
Thomas Denecker
,
Hélène Chiapello
,
Ariane Bize
JOBIM 2023 , Jun 2023, Nancy, France.
Poster communications
hal-04139284v1
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URGI genome annotation system:an integrated system for structural and functional genome annotation
Joelle J. Amselem
,
Michael Alaux
,
Nathalie Choisne
,
Nicolas Lapalu
,
Baptiste Brault
,
et al.
12. Edition du colloque JOBIM : Journées Ouvertes en Biologie, Informatique et Mathématiques , Jun 2011, Paris, France. 2 p
Conference papers
hal-01019754v1
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Genome interplay in the grain transcriptome of hexaploid bread wheat
Matthias Pfeifer
,
Karl G. Kugler
,
Simen R. Sandve
,
Bujie Zhan
,
Heidi Rudi
,
et al.
Journal articles
hal-02889033v1
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A reference sequence of wheat chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
,
et al.
22. Conference on Plant and Animal Genome , Jan 2014, San Diego, United States
Conference papers
hal-02742303v1
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Structural and Functional Partitioning of Bread Wheat Chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
,
et al.
Journal articles
hal-02638189v1
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IWGSC Sequence repository at URGI: New features and blast tool
Michael Alaux
,
Françoise Alfama Depauw
,
Loïc Couderc
,
Véronique Jamilloux
,
Claire Guerche
,
et al.
PAG XXII - Plant and Animal Genome , Jan 2014, San Diego, United States
Conference papers
hal-02801480v1
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A transposable element annotation pipeline and expression analysis reveal potentially active elements in the microalga Tisochrysis lutea
Jérémy Berthelier
,
Nathalie Casse
,
Nicolas Daccord
,
Véronique Jamilloux
,
Bruno Saint-Jean
,
et al.
Journal articles
hal-02627049v1
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De novo annotation of transposable elements : tackling the fat genome issue
Véronique Jamilloux
,
Josquin Daron
,
Frédéric Choulet
,
Hadi Quesneville
Journal articles
hal-02622009v1
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CAULIFINDER
Florian Maumus
,
Véronique Jamilloux
,
Héléna Vassilieff
,
Sana Haddad
Software
hal-03906699v1
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IWGSC Sequence repository : Blast your favorite gene against the wheat survey sequence
Michael Alaux
,
Françoise Alfama-Depauw
,
Véronique Jamilloux
,
Raphaël Flores
,
Daphné Verdelet
,
et al.
PAG XXI - Plant and Animal Genome , Jan 2013, San Diego, United States
Conference papers
hal-02804578v1
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Development of genomic resources to study the structure, function and evolution of the oak genome
Christophe Plomion
,
Joelle J. Amselem
,
Jean-Marc Aury
,
Catherine Bodenes
,
Emilie Chancerel
,
et al.
IUFRO working group "Genetics of Quercus and Nothofagus" , Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Conference papers
hal-01019850v1
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Organization and evolution of transposable elements along the bread wheat chromosome 3B
Josquin Daron
,
Natasha Glover
,
Lise Pingault
,
Sébastien Theil
,
Véronique Jamilloux
,
et al.
Journal articles
hal-02630315v1
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Transposable Elements in the Genome of the Lichen-Forming Fungus Umbilicaria pustulata and Their Distribution in Different Climate Zones along Elevation
Francesco Dal Grande
,
Véronique Jamilloux
,
Nathalie Choisne
,
Anjuli Calchera
,
Gregor Rolshausen
,
et al.
Journal articles
hal-03508049v1
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A reference sequence of wheat chromosome 3B
Frédéric Choulet
,
Adriana A. Alberti
,
Sébastien Theil
,
Natasha Marie Glover
,
Valérie Barbe
,
et al.
3. Plant Genomics Congress , May 2015, London, United Kingdom
Conference papers
hal-02740971v1
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A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
. International Wheat Genome Sequencing Consortium (iwgsc)
,
Michael M. Alaux
,
Françoise F. Alfama-Depauw
,
Frédéric Choulet
,
Loïc Couderc
,
et al.
Journal articles
hal-02640843v1
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Use cases and improvements of REPET package : pipeline and tools to identify and annotate TEs in genomic sequences
Véronique Jamilloux
,
Olivier Inizan
,
Sandie Arnoux
,
Timothée Flutre
,
Claire Hoede
,
et al.
17. Congrès National des Elements Transposables , Jul 2011, Lyon, France. 2011
Poster communications
hal-01190364v1
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REPET v3.0
Véronique Jamilloux
,
Françoise Alfama-Depauw
,
Johann Confais
,
Mariène Wan
,
Agnes Baud
,
et al.
2019
Software
hal-02790461v1
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Mining plant genomic and genetic data using the GnpIS information system
Anne-Francoise Adam-Blondon
,
Michael Alaux
,
Sophie Durand
,
Thomas Letellier
,
Guillaume Merceron
,
et al.
Book sections
hal-03206731v1
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Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila
Gabriel Rech
,
Santiago Radío
,
Sara Guirao-Rico
,
Laura Aguilera
,
Vivien Horvath
,
et al.
Journal articles
hal-03807727v1
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Ancient hybridizations among the ancestral genomes of bread wheat
T. Marcussen
,
S. Sandve
,
L. Heier
,
M. Spannagl
,
M. Pfeifer
,
et al.
Journal articles
hal-02889053v1
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IWGSC sequence repository : how to facilitate pseudomolecule assembly?
Michael M. Alaux
,
Frédéric Choulet
,
Loïc Couderc
,
Françoise F. Alfama-Depauw
,
Véronique Jamilloux
,
et al.
PAG XXIII - Plant and Animal Genome Conference , Jan 2015, San Diego, United States
Conference papers
hal-02741662v1
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Biodiversity of domestic birds
Michèle Tixier-Boichard
,
Gérard Coquerelle
,
Marie-Hélène Durand Tardif
,
D. Planchenault
,
Véronique Jamilloux
,
et al.
British Poultry Science , 2001, 42 (sp.), pp.S29-S31
Journal articles
hal-02673688v1
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IWGSC Sequence repository : new data and browsers
Michael Alaux
,
Loïc Couderc
,
Françoise Alfama Depauw
,
Véronique Jamilloux
,
Claire Guerche
,
et al.
12. IWGS (International Wheat Genetics Symposium) , Kyoto University [Kyoto] (KU). JPN., Sep 2013, Yokohama, Japan
Conference papers
hal-02806070v1
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PASTEC: an automatic transposable element classification tool
Claire Hoede
,
Sandie Arnoux
,
Mark Moissette
,
Timothée Chaumier
,
Olivier Inizan
,
et al.
Journal articles
hal-02639360v1
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IWGSC Sequence Repository: Moving towards tools to facilitate data integration for the reference sequence of wheat
Michael Alaux
,
Thomas Letellier
,
Françoise Alfama-Depauw
,
Véronique Jamilloux
,
Jane Rogers
,
et al.
PAG XXIV - Plant and Animal Genome Conference , Jan 2016, San Diego, United States
Conference papers
hal-01266518v1
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La biodiversité chez les oiseaux domestiques
Michèle Tixier-Boichard
,
Gérard Coquerelle
,
Marie-Hélène Durand Tardif
,
Dominique Planchenault
,
Véronique Jamilloux
,
et al.
4. Journées de la Recherche Avicole , Mar 2001, Nantes, France
Conference papers
hal-02760752v1
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De Novo Annotation of Transposable Elements: Tackling the Fat Genome Issue
Véronique Jamilloux
,
Josquin Daron
,
Frédéric Choulet
,
Hadi Quesneville
Journal articles
hal-02618951v1
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RepetDB: a unified resource for transposable element references
Joëlle Amselem
,
Guillaume Cornut
,
Nathalie Choisne
,
Michael Alaux
,
Françoise Alfama Depauw
,
et al.
Journal articles
hal-02625212v1
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The IWGSC Data repository and wheat data resources hosted at URGI: Overview and perspectives
Michael Alaux
,
Jane Rogers
,
Thomas Letellier
,
Raphaël Flores
,
Cyril Pommier
,
et al.
PAG XXVI - Plant and Animal Genome Conference , Jan 2018, San Diego, United States. pp.32 slides
Conference papers
hal-02788401v1
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http://www.brg.prd.fr
Véronique Jamilloux
2005
Software
hal-02826884v1
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