An atomistic statistically effective energy function for computational protein Design
Christopher Topham
,
Sophie Barbe
,
Isabelle André
Journal articles
hal-01886411v1
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Structural Investigation of the Thermostability and Product Specificity of Amylosucrase from the Bacterium Deinococcus geothermalis
Frédéric Guerin
,
Sophie Barbe
,
Sandra Serin
,
Gabrielle Veronese
,
David Guieysse
,
et al.
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hal-01268407v1
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Mechanism of HIV-1 integrase inhibition by styrylquinoline derivatives in vitro.
Eric Deprez
,
Sophie Barbe
,
Macieij Kolaski
,
Hervé Leh
,
Fatima Zouhiri
,
et al.
Journal articles
hal-00247990v1
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Modulation de l'interaction intégrase/ADN du VIH-1 par des dérivés des styrylquinoléines et par la modification de nucléotides
Sophie Barbe
Biochimie [q-bio.BM]. École normale supérieure de Cachan - ENS Cachan, 2006. Français.
⟨NNT : ⟩
Theses
tel-00129455v1
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The covalent complex of Jo-In results from a long-lived, non-covalent intermediate state with near-native structure
Neil Cox
,
Cyril Charlier
,
Ramadoss Vijayaraj
,
Marion de La Mare
,
Sophie Barbe
,
et al.
Journal articles
hal-03554277v1
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Guaranteed Weighted Counting for Affinity Computation: Beyond Determinism and Structure
Clement Viricel
,
David Simoncini
,
Sophie Barbe
,
Thomas Schiex
CP16 - 22nd International Conference on the Principles and Practice of Constraint Programming , Sep 2016, Toulouse, France. pp.18,
⟨10.1007/978-3-319-44953-1_46⟩
Conference papers
hal-01828389v1
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Guaranteed Diversity & Quality for the Weighted CSP
Manon Ruffini
,
Jelena Vucinic
,
Simon de Givry
,
George Katsirelos
,
Sophie Barbe
,
et al.
2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI) , Nov 2019, Portland, United States. pp.18-25,
⟨10.1109/ICTAI.2019.00012⟩
Conference papers
hal-03181764v1
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Computational strategy for protein design based on structure-dynamics-activity relationship insights: GH11Xylanases as a casestudy
Gleb Novikov
,
Jelena Vucinic
,
Cedric Montanier
,
Thomas Schiex
,
Claire Dumon
,
et al.
13. Carbohydrate Bioengineering Meeting , May 2019, Toulouse, France
Poster communications
hal-02928929v1
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Structural Investigation of the Thermostability and Product Specificity of Amylosucrase from the BacteriumDeinococcus geothermalis
Frédéric Guerin
,
Sophie Barbe
,
Sandra Pizzut-Serin
,
Gabrielle Potocki-Veronese
,
David Guieysse
,
et al.
Journal articles
hal-03003044v1
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Cost Function Networks to Solve Large Computational Protein Design Problems
David Allouche
,
Sophie Barbe
,
Simon de Givry
,
George Katsirelos
,
Yahia Lebbah
,
et al.
Book sections
hal-02177634v1
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Mutant yeast strain capable of producing medium chain fatty acids
Florence Bordes
,
C. Rigouin
,
Alain Marty
,
Marc Guéroult
,
Isabelle Andre
,
et al.
France, Patent n° : EP17305044. 2016
Patents
hal-02963117v1
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CAZyme discovery and design for sweet dreams
Isabelle André
,
Gabrielle Veronese
,
Sophie Barbe
,
Claire Moulis
,
Magali Remaud Simeon
Journal articles
hal-01268759v1
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An integrated approach reveals how lipo‐chitooligosaccharides interact with the lysin motif receptor‐like kinase MtLYR3
Younes Bouchiba
,
Jérémy Esque
,
Ludovic Cottret
,
Maude Maréchaux
,
Mégane Gaston
,
et al.
Journal articles
hal-03684572v1
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Computer-aided engineering of a branching sucrase for the glucodiversification of a tetrasaccharide precursor of S. flexneri antigenic oligosaccharides
Mounir Benkoulouche
,
Akli Ben Imeddourene
,
Louis-Antoine Barel
,
Dorian Lefebvre
,
Mathieu Fanuel
,
et al.
Journal articles
hal-03382404v1
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Fitness Landscape Analysis around the Optimum in Computational Protein Design
David Simoncini
,
Sophie Barbe
,
Thomas Schiex
,
Sébastien Verel
Genetic and Evolutionary Computation Conference (GECCO) 2018 , Jul 2018, Kyoto, Japan
Conference papers
hal-01823638v1
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Constraint Programming and Graphical models - Pushing data into your models, The protein design case.
Thomas Schiex
,
Sophie Barbe
,
David Simoncini
,
Jelena Vucinic
,
Manon Ruffini
,
et al.
23rd International Symposium on Mathematical Programming (ISMP-18) , Jul 2018, Bordeaux, France
Conference papers
hal-02154354v1
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A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal
Angeline Pelus
,
Gaëlle Bordes
,
Sophie Barbe
,
Younes Bouchiba
,
Callum Burnard
,
et al.
Journal articles
hal-03372120v1
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Effect of a water molecule on the sugar puckering of uridine, 2'-deoxyuridine, and 2'-O-methyl uridine inserted in duplexes.
Sophie Barbe
,
Marc Le Bret
Journal articles
istex
hal-00359088v1
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Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems
Antoine Charpentier
,
David Mignon
,
Sophie Barbe
,
Juan Cortés
,
Thomas Schiex
,
et al.
Journal articles
hal-01943616v1
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Approximate counting with deterministic guarantees for affinity computation
Clément Viricel
,
David Simoncini
,
David Allouche
,
Simon de Givry
,
Sophie Barbe
,
et al.
3. International Conference on Modelling, Computation and Optimization in Information Systems and Management Sciences - MCO 2015 , Université de Lorraine (UL). FRA., May 2015, Metz, France. 500 p.,
⟨10.1007/978-3-319-18167-7_15⟩
Conference papers
hal-01269259v1
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NOVEL ESTERASES AND USES THEREOF
Christopher Topham
,
Hélène Texier
,
Vincent Tournier
,
Marie-Laure Desrousseaux
,
Sophie Duquesne
,
et al.
France, Patent n° : WO/2018/011284. 2018
Patents
hal-02961834v1
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Molecular flexibility in computational protein design: an algorithmic perspective
Younes Bouchiba
,
Juan Cortés
,
Thomas Schiex
,
Sophie Barbe
Journal articles
hal-03221838v1
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Engineering of anp efficient mutant of Neisseria polysaccharea amylosucrase for the synthesis of controlled size maltooligosaccharides
Alizée Verges
,
Sophie Barbe
,
Emmanuelle Cambon
,
Claire Moulis
,
Samuel Tranier
,
et al.
Journal articles
hal-01602744v1
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Production of medium chain fatty acids by Yarrowia lipolytica: Combining molecular design and TALEN to engineer the fatty acid synthase
Coraline Rigouin
,
Marc Gueroult
,
Christian Croux
,
Gwendoline Dubois
,
Vinciane Borsenberger
,
et al.
Journal articles
hal-01605956v1
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Seven Amino Acid Types Suffice to Create the Core Fold of RNA Polymerase
Sota Yagi
,
Aditya K Padhi
,
Jelena Vucinic
,
Sophie Barbe
,
Thomas Schiex
,
et al.
Journal articles
hal-03360584v1
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Enzyme Active Site Loop Revealed as a Gatekeeper for Cofactor Flip by Targeted Molecular Dynamics Simulations and FRET-Based Kinetics
Sophie Rahuel-Clermont
,
Raphaël Bchini
,
Sophie Barbe
,
Séverine Boutserin
,
Isabelle André
,
et al.
Journal articles
hal-02022828v1
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Insights into lid movements of Burkholderia cepacia lipase inferred from molecular dynamics simulations
Sophie Barbe
,
Vincent Lafaquière
,
David Guieysse
,
Pierre Monsan
,
Magali Remaud Simeon
,
et al.
Journal articles
hal-02660544v1
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Guaranteed Discrete Energy Optimization on Large Protein Design Problems
David Simoncini
,
David Allouche
,
Simon de Givry
,
Céline Delmas
,
Sophie Barbe
,
et al.
Journal articles
hal-02637306v1
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Computational protein design as a cost function network optimization problem
Thomas Schiex
,
David Allouche
,
Simon de Givry
,
George Katsirelos
,
Sophie Barbe
,
et al.
Séminaire MOGISA du LAAS/CNRS , Centre National de la Recherche Scientifique (CNRS). FRA., Jun 2013, Toulouse, France
Conference papers
hal-01268632v1
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Three ParA Dimers Cooperatively Assemble on Type Ia Partition Promoters
François Boudsocq
,
Maya Salhi
,
Sophie Barbe
,
Jean-Yves Bouet
Journal articles
hal-03358090v1
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