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Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism

Daniel R. Reuss , Josef Altenbuchner , Ulrike Mäder , Hermann Rath , Till Ischebeck et al.
Genome Research, 2017, 27 (2), pp.289-299. ⟨10.1101/gr.215293.116⟩
Journal articles hal-02626760v1
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Complete Genome Sequence of Flavobacteriumpsychrophilum Strain OSU THCO2-90, Used for Functional Genetic Analysis.

Tatiana Rochat , Paul Barbier , Pierre Nicolas , Valentin Loux , David Perez Pascual et al.
Genome Announcements, 2017, 5 (23), 2 p. ⟨10.1128/genomeA.01665-16⟩
Journal articles hal-01607798v1

Transcriptomic analysis of the adaptation of Listeria monocytogenes at low temperature in presence of exogenous unsaturated fatty acids

Aurore Quilleré , Angelos Papadochristopoulos , Pierre Nicolas , Maud Darsonval , Florence Dubois-Brissonnet et al.
Foodmicro 2022, Aug 2022, Athens, France
Conference papers hal-03774023v1

Urban Noise Undermines Female Sexual Preferences for Low-Frequency Songs in Domestic Canaries

Guillaume Huet Des Aunay , Hans Slabbekoorn , Laurent Nagle , Floriane Passas , Pierre Nicolas et al.
Animal Behaviour, 2014, 87, pp.67-75. ⟨10.1016/j.anbehav.2013.10.010⟩
Journal articles hal-01478459v1

Female Maternal Investment in Response to Attractive Male Songs under Urban Noise Conditions in Domestic Canaries Serinus Canaria

Guillaume Huet Des Aunay , Marco Grenna , Hans Slabbekoorn , Pierre Nicolas , Laurent Nagle et al.
VIIth European Conference on Behavioural Biology, Session: Environmental influences on avian vocal behaviour, Jul 2014, Prague, Czech Republic. 2014
Poster communications hal-01479367v1

Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis

Vladimir Bidnenko , Pierre Nicolas , Aleksandra Grylak-Mielnicka , Olivier Delumeau , Sandrine Auger et al.
PLoS Genetics, 2017, 13 (7), pp.e1006909. ⟨10.1371/journal.pgen.1006909⟩
Journal articles hal-03343062v1

Inference in a metapopulation model of paratuberculosis in cattle via a composite-likelihood approximation

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu et al.
Modelling in Animal Health conference (ModAH), Jun 2017, Nantes, France. 69 p
Conference papers hal-01608112v1
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Transcriptome architecture and regulation at environmental transitions in flavobacteria: the case of an important fish pathogen

Cyprien Guérin , Bo-Hyung Lee , Benjamin Fradet , Erwin van Dijk , Bogdan Mirauta et al.
ISME Communications, 2021, 1 (1), ⟨10.1038/s43705-021-00029-9⟩
Journal articles hal-03356343v1
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Online exploration of transcription profiles along B. subtilis and S. aureus

Sandra Derozier , Pierre Nicolas , Ulrike Mäder , Cyprien Guerin
JOBIM 2020, Jun 2020, Virtuel, France
Poster communications hal-02904188v1

Structure, Synthesis, and Molecular Cloning of Dermaseptins B, a Family of Skin Peptide Antibiotics

Stéphane Charpentier , Mohamed Amiche , Jan Mester , Véronique Vouille , Jean-Pierre Le Caer et al.
Journal of Biological Chemistry, 1998, 273 (24), pp.14690-14697. ⟨10.1074/jbc.273.24.14690⟩
Journal articles hal-02160836v1

Nation-wide and local diversity of the fish pathogen Flavobacterium psychrophilum in Japan revealed by MLST analysis

Erina Fujiwara-Nagata , Pierre Nicolas , Céline Chantry-Darmon , Jean Francois J. F. Bernardet , Mitsuru Eguchi et al.
Flavobacterium 2012, University of Turku. Abo Akademie, Turku, FIN., 2012, Turku, Finland
Conference papers hal-02805452v1

New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains

Devon Kavanaugh , Benjamin Glasset , Rozenn Dervyn , Cyprien Guérin , Sandra Plancade et al.
Clinical Microbiology and Infection, 2022, 28 (1), pp.137.e1-137.e8. ⟨10.1016/j.cmi.2021.05.035⟩
Journal articles hal-03356344v1

Phenotypic and Genetic Characterization of Flavobacterium psychrophilum Recovered from Diseased Salmonids in China

Shaowu Li , Jingru Chai , Christopher Knupp , Pierre Nicolas , Di Wang et al.
Microbiology Spectrum, 2021, 9 (2), ⟨10.1128/Spectrum.00330-21⟩
Journal articles hal-03356345v1

Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions

Ulrike Mäder , Pierre Nicolas , Maren Depke , Jan Pané-Farré , Michel Debarbouille et al.
PLoS Genetics, 2016, 12 (4), pp.e1005962. ⟨10.1371/journal.pgen.1005962⟩
Journal articles hal-03273507v1

Dealing with stochasticity: credibility intervals for a point-estimate using a composite likelihood approximation

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu et al.
IDDconf 2019, Sep 2019, Ambleside, United Kingdom. , 2019
Poster communications hal-02786726v1
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C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair.

Stephen Mcgovern , Sonia Baconnais , Pierre Roblin , Pierre Nicolas , Pascal Drevet et al.
Nucleic Acids Research, 2016, 44 (10), pp.4785-4806. ⟨10.1093/nar/gkw149⟩
Journal articles hal-01457533v1
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Statistical modelling of bacterial promoter sequences for regulatory motif discovery with the help of transcriptome data: application to Listeria monocytogenes

Ibrahim Sultan , Vincent Fromion , Sophie Schbath , Pierre Nicolas
Journal of the Royal Society Interface, 2020, 17 (171), pp.20200600. ⟨10.1098/rsif.2020.0600⟩
Journal articles hal-03270230v1

Approche combinées RNAseq/imagerie pour la caractérisation transcriptionnelle de sous populations au sein de biofilms de B. subtilis

Yasmine Dergham , Dominique Le Coq , Pierre Nicolas , Eugénie Huillet , Pilar Sanchez et al.
Journées Nutritions Ecosystèmes Microbiens (NEM), Apr 2022, Jouy-en-Josas, France
Conference papers hal-03652600v1

Statistical modeling of bacterial promoter sequences for regulatory motif discovery using expression data

Islam Sultan , Sophie Schbath , Pierre Nicolas
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Conference papers hal-02734855v1

Les techniques MLST et PFGE pour l’étude de Flavobacterium psychrophilum sur isolats cliniques et non cliniques

Ségolène Calvez , Charlène Nguedia-Siekoula , Pierre Nicolas , Éric Duchaud
4. Journées de la Recherche Filières Piscicoles, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2014, Paris, France
Conference papers hal-02744351v1

Exploring Listeria monocytogenes transcriptomes in correlation with divergence of lineages and virulence as measured in Galleria mellonella

Bo-Hyung Lee , Dominique Garmyn , Laurent Gal , Cyprien Guerin Guérin , Laurent Guillier et al.
Applied and Environmental Microbiology, 2019, 85 (21), ⟨10.1128/AEM.01370-19⟩
Journal articles hal-02296269v1

New DNA binding sites for CcpA, the major regulator of the carbon catabolite response in Bacillus subtilis

Nathalie N. Pigeonneau , François Lecointe , Pierre Nicolas , Philippe Noirot
Systems Biology of Microorganisms, Mar 2010, Paris, France. , 2010
Poster communications hal-02815793v1

Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models

Bogdan Mirauta , Pierre Nicolas , Hugues Richard
Bioinformatics, 2014, 30 (10), pp.1409-1416. ⟨10.1093/bioinformatics/btu042⟩
Journal articles hal-01528412v1

Negative impact of urban noise on sexual receptivity and clutch size in female domestic canaries

Guillaume Huet Des Aunay , Marco Grenna , Hans Slabbekoorn , Pierre Nicolas , Laurent Nagle et al.
Bird sense, Sep 2017, London, United Kingdom
Poster communications hal-01699848v1

The WalKR System Controls Major Staphylococcal Virulence Genes and Is Involved in Triggering the Host Inflammatory Response

Aurélia Delauné , Sarah Dubrac , Charlène Blanchet , Olivier Poupel , Ulrike Mäder et al.
Infection and Immunity, 2012, 80 (10), pp.3438-3453. ⟨10.1128/IAI.00195-12⟩
Journal articles hal-03273537v1

Insights on paratuberculosis in cattle from a metapopulation model and inference via a composite-likelihood approximation.

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu et al.
Epidemics6 - International Conference on Infectious Disease Dynamics, Nov 2017, Sitges, Spain. 6ème ed., 2017, Epidemics - International Conference on Infectious Disease Dynamics
Poster communications hal-02733575v1

Inference in a metapopulation model via a composite-likelihood approximation

Gael Beaunée , Pauline Ezanno , Alain Joly , Pierre Nicolas , Elisabeta Vergu et al.
BioHasard "Stochastic Models for Biology", Aug 2019, Rennes, France
Conference papers hal-02786309v1
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Functional interplay between Mediator and TFIIB in preinitiation complex assembly in relation to promoter architecture

Thomas Eychenne , Elizaveta Novikova , Marie-Bénédicte Barrault , Olivier Alibert , Claire Boschiero et al.
Genes and Development, 2016, 30 (18), pp.2119 - 2132. ⟨10.1101/gad.285775.116⟩
Journal articles hal-01405672v1
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Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study

Stéphanie-Marie Deutsch , Mahendra Mariadassou , Pierre Nicolas , Sandrine Parayre , Rozenn Le Guellec et al.
Scientific Reports, 2017, 7, pp.46409. ⟨10.1038/srep46409⟩
Journal articles hal-01510019v1
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Intestinal epithelial stem cells do not protect their genome by asymmetric chromosome segregation

Marion Escobar , Pierre Nicolas , Fatiha Sangar , Sabine Laurent-Chabalier , Philippe Clair et al.
Nature Communications, 2011, 2 (1), pp.1-9. ⟨10.1038/ncomms1260⟩
Journal articles hal-02459471v1