Large-scale reduction of the Bacillus subtilis genome: consequences for the transcriptional network, resource allocation, and metabolism
Daniel R. Reuss
,
Josef Altenbuchner
,
Ulrike Mäder
,
Hermann Rath
,
Till Ischebeck
et al.
Journal articles
hal-02626760v1
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Complete Genome Sequence of Flavobacteriumpsychrophilum Strain OSU THCO2-90, Used for Functional Genetic Analysis.
Tatiana Rochat
,
Paul Barbier
,
Pierre Nicolas
,
Valentin Loux
,
David Perez Pascual
et al.
Journal articles
hal-01607798v1
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Transcriptomic analysis of the adaptation of Listeria monocytogenes at low temperature in presence of exogenous unsaturated fatty acids
Aurore Quilleré
,
Angelos Papadochristopoulos
,
Pierre Nicolas
,
Maud Darsonval
,
Florence Dubois-Brissonnet
et al.
Foodmicro 2022 , Aug 2022, Athens, France
Conference papers
hal-03774023v1
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Urban Noise Undermines Female Sexual Preferences for Low-Frequency Songs in Domestic Canaries
Guillaume Huet Des Aunay
,
Hans Slabbekoorn
,
Laurent Nagle
,
Floriane Passas
,
Pierre Nicolas
et al.
Journal articles
hal-01478459v1
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Female Maternal Investment in Response to Attractive Male Songs under Urban Noise Conditions in Domestic Canaries Serinus Canaria
Guillaume Huet Des Aunay
,
Marco Grenna
,
Hans Slabbekoorn
,
Pierre Nicolas
,
Laurent Nagle
et al.
VIIth European Conference on Behavioural Biology, Session: Environmental influences on avian vocal behaviour , Jul 2014, Prague, Czech Republic. 2014
Poster communications
hal-01479367v1
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Termination factor Rho: From the control of pervasive transcription to cell fate determination in Bacillus subtilis
Vladimir Bidnenko
,
Pierre Nicolas
,
Aleksandra Grylak-Mielnicka
,
Olivier Delumeau
,
Sandrine Auger
et al.
Journal articles
hal-03343062v1
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Inference in a metapopulation model of paratuberculosis in cattle via a composite-likelihood approximation
Gael Beaunée
,
Pauline Ezanno
,
Alain Joly
,
Pierre Nicolas
,
Elisabeta Vergu
et al.
Modelling in Animal Health conference (ModAH) , Jun 2017, Nantes, France. 69 p
Conference papers
hal-01608112v1
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Transcriptome architecture and regulation at environmental transitions in flavobacteria: the case of an important fish pathogen
Cyprien Guérin
,
Bo-Hyung Lee
,
Benjamin Fradet
,
Erwin van Dijk
,
Bogdan Mirauta
et al.
Journal articles
hal-03356343v1
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Online exploration of transcription profiles along B. subtilis and S. aureus
Sandra Derozier
,
Pierre Nicolas
,
Ulrike Mäder
,
Cyprien Guerin
JOBIM 2020 , Jun 2020, Virtuel, France
Poster communications
hal-02904188v1
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Structure, Synthesis, and Molecular Cloning of Dermaseptins B, a Family of Skin Peptide Antibiotics
Stéphane Charpentier
,
Mohamed Amiche
,
Jan Mester
,
Véronique Vouille
,
Jean-Pierre Le Caer
et al.
Journal articles
hal-02160836v1
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Nation-wide and local diversity of the fish pathogen Flavobacterium psychrophilum in Japan revealed by MLST analysis
Erina Fujiwara-Nagata
,
Pierre Nicolas
,
Céline Chantry-Darmon
,
Jean Francois J. F. Bernardet
,
Mitsuru Eguchi
et al.
Flavobacterium 2012 , University of Turku. Abo Akademie, Turku, FIN., 2012, Turku, Finland
Conference papers
hal-02805452v1
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New genetic biomarkers to differentiate non-pathogenic from clinically relevant Bacillus cereus strains
Devon Kavanaugh
,
Benjamin Glasset
,
Rozenn Dervyn
,
Cyprien Guérin
,
Sandra Plancade
et al.
Journal articles
hal-03356344v1
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Phenotypic and Genetic Characterization of Flavobacterium psychrophilum Recovered from Diseased Salmonids in China
Shaowu Li
,
Jingru Chai
,
Christopher Knupp
,
Pierre Nicolas
,
Di Wang
et al.
Journal articles
hal-03356345v1
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Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions
Ulrike Mäder
,
Pierre Nicolas
,
Maren Depke
,
Jan Pané-Farré
,
Michel Debarbouille
et al.
Journal articles
hal-03273507v1
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Dealing with stochasticity: credibility intervals for a point-estimate using a composite likelihood approximation
Gael Beaunée
,
Pauline Ezanno
,
Alain Joly
,
Pierre Nicolas
,
Elisabeta Vergu
et al.
IDDconf 2019 , Sep 2019, Ambleside, United Kingdom.
, 2019
Poster communications
hal-02786726v1
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C-terminal region of bacterial Ku controls DNA bridging, DNA threading and recruitment of DNA ligase D for double strand breaks repair.
Stephen Mcgovern
,
Sonia Baconnais
,
Pierre Roblin
,
Pierre Nicolas
,
Pascal Drevet
et al.
Journal articles
hal-01457533v1
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Statistical modelling of bacterial promoter sequences for regulatory motif discovery with the help of transcriptome data: application to Listeria monocytogenes
Ibrahim Sultan
,
Vincent Fromion
,
Sophie Schbath
,
Pierre Nicolas
Journal articles
hal-03270230v1
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Approche combinées RNAseq/imagerie pour la caractérisation transcriptionnelle de sous populations au sein de biofilms de B. subtilis
Yasmine Dergham
,
Dominique Le Coq
,
Pierre Nicolas
,
Eugénie Huillet
,
Pilar Sanchez
et al.
Journées Nutritions Ecosystèmes Microbiens (NEM) , Apr 2022, Jouy-en-Josas, France
Conference papers
hal-03652600v1
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Statistical modeling of bacterial promoter sequences for regulatory motif discovery using expression data
Islam Sultan
,
Sophie Schbath
,
Pierre Nicolas
JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques , Jul 2018, Marseille, France
Conference papers
hal-02734855v1
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Les techniques MLST et PFGE pour l’étude de Flavobacterium psychrophilum sur isolats cliniques et non cliniques
Ségolène Calvez
,
Charlène Nguedia-Siekoula
,
Pierre Nicolas
,
Éric Duchaud
4. Journées de la Recherche Filières Piscicoles , Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2014, Paris, France
Conference papers
hal-02744351v1
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Exploring Listeria monocytogenes transcriptomes in correlation with divergence of lineages and virulence as measured in Galleria mellonella
Bo-Hyung Lee
,
Dominique Garmyn
,
Laurent Gal
,
Cyprien Guerin Guérin
,
Laurent Guillier
et al.
Journal articles
hal-02296269v1
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New DNA binding sites for CcpA, the major regulator of the carbon catabolite response in Bacillus subtilis
Nathalie N. Pigeonneau
,
François Lecointe
,
Pierre Nicolas
,
Philippe Noirot
Systems Biology of Microorganisms , Mar 2010, Paris, France.
, 2010
Poster communications
hal-02815793v1
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Parseq: reconstruction of microbial transcription landscape from RNA-Seq read counts using state-space models
Bogdan Mirauta
,
Pierre Nicolas
,
Hugues Richard
Journal articles
hal-01528412v1
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Negative impact of urban noise on sexual receptivity and clutch size in female domestic canaries
Guillaume Huet Des Aunay
,
Marco Grenna
,
Hans Slabbekoorn
,
Pierre Nicolas
,
Laurent Nagle
et al.
Bird sense , Sep 2017, London, United Kingdom
Poster communications
hal-01699848v1
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The WalKR System Controls Major Staphylococcal Virulence Genes and Is Involved in Triggering the Host Inflammatory Response
Aurélia Delauné
,
Sarah Dubrac
,
Charlène Blanchet
,
Olivier Poupel
,
Ulrike Mäder
et al.
Journal articles
hal-03273537v1
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Insights on paratuberculosis in cattle from a metapopulation model and inference via a composite-likelihood approximation.
Gael Beaunée
,
Pauline Ezanno
,
Alain Joly
,
Pierre Nicolas
,
Elisabeta Vergu
et al.
Epidemics6 - International Conference on Infectious Disease Dynamics , Nov 2017, Sitges, Spain. 6ème ed., 2017, Epidemics - International Conference on Infectious Disease Dynamics
Poster communications
hal-02733575v1
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Inference in a metapopulation model via a composite-likelihood approximation
Gael Beaunée
,
Pauline Ezanno
,
Alain Joly
,
Pierre Nicolas
,
Elisabeta Vergu
et al.
BioHasard "Stochastic Models for Biology" , Aug 2019, Rennes, France
Conference papers
hal-02786309v1
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Functional interplay between Mediator and TFIIB in preinitiation complex assembly in relation to promoter architecture
Thomas Eychenne
,
Elizaveta Novikova
,
Marie-Bénédicte Barrault
,
Olivier Alibert
,
Claire Boschiero
et al.
Journal articles
hal-01405672v1
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Identification of proteins involved in the anti-inflammatory properties of Propionibacterium freudenreichii by means of a multi-strain study
Stéphanie-Marie Deutsch
,
Mahendra Mariadassou
,
Pierre Nicolas
,
Sandrine Parayre
,
Rozenn Le Guellec
et al.
Journal articles
hal-01510019v1
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Intestinal epithelial stem cells do not protect their genome by asymmetric chromosome segregation
Marion Escobar
,
Pierre Nicolas
,
Fatiha Sangar
,
Sabine Laurent-Chabalier
,
Philippe Clair
et al.
Journal articles
hal-02459471v1
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