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Evolution of embryonic cis-regulatory landscapes between divergent Phallusia and Ciona ascidians

Alicia Madgwick , Marta Silvia Magri , Christelle Dantec , Damien Gailly , Ulla-Maj Fiuza , et al.
Developmental Biology, 2019, 448 (2), pp.71-87. ⟨10.1016/j.ydbio.2019.01.003⟩
Journal articles hal-02339500v1

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites

P. Khoueiry , U. Rothbacher , Y. Ohtsuka , F. Daian , E. Frangulian , et al.
Current Biology - CB, 2010, 20 (9), pp.792-802. ⟨10.1016/j.cub.2010.03.063⟩
Journal articles hal-00566796v1

Unfolding a chordate developmental program, one cell at a time: invariant cell lineages, short-range inductions and evolutionary plasticity in ascidians

Patrick Lemaire
Developmental Biology, 2009, 332, pp.48-60
Journal articles hal-00428990v1
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Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi

Kai Wang , Christelle Dantec , Patrick Lemaire , Takeshi A. Onuma , Hiroki Nishida
BMC Genomics, 2017, 18 (1), ⟨10.1186/s12864-017-3707-5⟩
Journal articles hal-01875253v1

Q & A: an interview with Patrick Lemaire.

Patrick Lemaire
Current Biology - CB, 2006, 16, pp.R143-144
Journal articles hal-00088563v1
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Cell Pairings for Ascidian Embryo Registration

Gaël Michelin , Léo Guignard , Ulla-Maj Fiuza , Patrick Lemaire , Christophe Godin , et al.
ISBI - International Symposium on Biomedical Imaging, Institute of Electrical and Electronics Engineers (IEEE). USA., Apr 2015, New York, United States. ⟨10.1109/ISBI.2015.7163872⟩
Conference papers hal-01113166v1

Contact area-dependent cell communication and the morphological invariance of ascidian embryogenesis

Léo Guignard , Ulla-Maj Fiuza , Bruno Leggio , Julien Laussu , Emmanuel Faure , et al.
Science, 2020, 369 (6500), pp.158. ⟨10.1126/science.aar5663⟩
Journal articles hal-02903409v1

Neural tissue in ascidian embryos is induced by FGF9/16/20 acting via maternal GATA and ETS factors

Vadim Bertrand , C. Hudson , D. Caillol , C. Popovici , Patrick Lemaire
Cell, 2003, 115 (5), pp.615-27
Journal articles hal-00566632v1

A genome database for a Japanese population of the larvacean Oikopleura dioica

Kai Wang , Ryo Tomura , Wei Chen , Miho Kiyooka , Hinako Ishizaki , et al.
Development, Growth and Differentiation, 2020, 62 (6), pp.450-461. ⟨10.1111/dgd.12689⟩
Journal articles hal-03346953v1

Ascidians and the plasticity of the chordate developmental program

Patrick Lemaire , W.C Smith , H. Nishida
Current Biology - CB, 2008, 18, pp.R620-631
Journal articles hal-00428987v1

Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors.

Vincent Bertrand , Clare Hudson , Danielle Caillol , Cornel Popovici , Patrick Lemaire
Cell, 2003, 115 (5), pp.615-27
Journal articles hal-02115675v1

A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis.

Clare Hudson , Sébastien Darras , Danielle Caillol , Hitoyoshi Yasuo , Patrick Lemaire
Development (Cambridge, England), 2003, 130 (1), pp.147-59
Journal articles hal-02115682v1

Cellular morphogenesis in ascidians: how to shape a simple tadpole

Edwin Munro , Francois Robin , Patrick Lemaire
Current Opinion in Genetics and Development, 2006, 16 (4), pp.399-405. ⟨10.1016/j.gde.2006.06.004⟩
Journal articles istex hal-01440654v1

Role of Siamois before and during gastrulation. In Gastrulation: From cells to embryo.

L. Kodjabachian , Patrick Lemaire
Cold Spring Harbor Laboratory Press, 2004, pp.609-617
Journal articles hal-00311070v1

A conserved role for the MEK signalling pathway in neural tissue specification and posteriorisation in the invertebrate chordate, the ascidian Ciona intestinalis.

C. Hudson , S. Darras , D. Caillol , H. Yasuo , Patrick Lemaire
Development (Cambridge, England), 2003, 130, pp.147-159
Journal articles hal-00311350v1

Creme de la Kremen of Wnt signalling inhibition

U. Rothbacher , Patrick Lemaire
Nature Cell Biology, 2002, 4 (7), pp.E172-3. ⟨10.1038/ncb0702-e172⟩
Journal articles hal-00566787v1
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ANISEED 2015: a digital framework for the comparative developmental biology of ascidians

Matija Brozovic , Cyril Martin , Christelle Dantec , Delphine Dauga , Mickäel Mendez , et al.
Nucleic Acids Research, 2016, 44 (D1), pp.D808-D818. ⟨10.1093/nar/gkv966⟩
Journal articles hal-01295171v1

Functional analysis of synaptotagmin gene regulatory regions in two distantly related ascidian species

J. Matsumoto , Y. Katsuyama , Y. Ohtsuka , Patrick Lemaire , Y. Okamura
Development Growth and Differentiation, 2008, 50, pp.543-552
Journal articles hal-00429026v1

Ci-FoxA-a is the earliest zygotic determinant of the ascidian anterior ectoderm and directly activates Ci-sFRP1/5.

C. Lamy , U. Rothbacher , D. Caillol , Patrick Lemaire
Development (Cambridge, England), 2006, 133, pp.2835-2844
Journal articles hal-00088579v1

Neural induction in Xenopus requires early FGF signalling in addition to BMP inhibition

E. Delaune , Patrick Lemaire , L. Kodjabachian
Development (Cambridge, England), 2005, 132, pp.299-310
Journal articles hal-00118172v1

Early animal embryogenesis: Why so much variability?

Patrick Lemaire , S. Marcellini
Biologist, 2003, 25, pp.15-19
Journal articles hal-00566653v1

Divergent functions of two ancient Hydra Brachyury paralogues suggest specific roles for their C-terminal domains in tissue fate induction

H. Bielen , S. Oberleitner , S. Marcellini , L. Gee , Patrick Lemaire , et al.
Development (Cambridge, England), 2007, 134, pp.4187-4197
Journal articles hal-00303134v1

Similar regulatory logic in Ciona intestinalis for two Wnt pathway modulators, ROR and SFRP-1/5.

Hélène Auger , Clément Lamy , Maximilian Haeussler , Pierre Khoueiry , Patrick Lemaire , et al.
Developmental Biology, 2009, 329 (2), pp.364-373. ⟨10.1016/j.ydbio.2009.02.018⟩
Journal articles istex hal-00374228v1

Sequential activation of apical and basolateral contractility drives ascidian endoderm invagination

K. Sherrard , F. Robin , Patrick Lemaire , E. Munro
Current Biology - CB, 2010, 20 (17), pp.1499-510. ⟨10.1016/j.cub.2010.06.075⟩
Journal articles hal-00566790v1

The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program

O. Tassy , D. Dauga , F. Daian , D. Sobral , F. Robin , et al.
Genome Research, 2010, 20 (10), pp.1459-68. ⟨10.1101/gr.108175.110⟩
Journal articles hal-00566811v1

Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations

Y. Satou , K. Mineta , M. Ogasawara , Y. Sasakura , E. Shoguchi , et al.
Genome Biology, 2008, 9 (10), pp.R152. ⟨10.1186/gb-2008-9-10-r152⟩
Journal articles hal-00566607v1

Developmental biology. How many ways to make a chordate?

Patrick Lemaire
Science, 2006, 312 (5777), pp.1145-6. ⟨10.1126/science.1128784⟩
Journal articles hal-00566625v1

[Ascidian embryos: from the birth of experimental embryology to the analysis of gene regulatory networks]

C. Lamy , Patrick Lemaire
Medicine Sci, 2008, 24 (3), pp.263-9
Journal articles hal-00302902v1

The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins.

P. Dehal , Y. Satou , Patrick Lemaire
Science, 2002, 298, pp.2157-67
Journal articles hal-00311352v1

How many ways to make a chordate: Comparison of the developmental programmes of ascidians and vertebrates

Daniel Sobral , Andrea Pasini , Patrick Lemaire
Mechanisms of Development, 2009, 126, pp.S28. ⟨10.1016/j.mod.2009.06.1059⟩
Journal articles hal-01440470v1