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How does Oenococcus oeni adapt to its environment? A pangenomic oligonucleotide microarray for analysis O. oeni gene expression under wine shock.

Aurélie Goulielmakis , Julen Bridier , Aurélien Barré , Olivier Claisse , David Sherman , et al.
Oeno2011- 9e symposium international d'oenologie de Bordeaux: Actes de colloques du 9e symposium international d'oenologie de Bordeaux, Jun 2011, Bordeaux, France. pp.358-363
Conference papers hal-00646867v1

Fusion and fission of genes define a metric between fungal genomes.

Pascal Durrens , Macha Nikolski , David James Sherman
PLoS Computational Biology, 2008, 4 (10), pp.e1000200. ⟨10.1371/journal.pcbi.1000200⟩
Journal articles inria-00341569v1
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Diversity and variability of NOD-like receptors in fungi

Witold Dyrka , Marina Lamacchia , Pascal Durrens , Bostjan Kobe , Asen Daskalov , et al.
Genome Biology and Evolution, 2014, in press. ⟨10.1093/gbe/evu251⟩
Journal articles hal-01083450v1

Genomic exploration of the hemiascomycetous yeasts: 21. Comparative functional classification of genes.

C. Gaillardin , G. Duchateau-Nguyen , F. Tekaia , B. Llorente , S. Casaregola , et al.
FEBS Letters, 2000, 487 (1), pp.134-49. ⟨10.1016/S0014-5793(00)02292-4⟩
Journal articles hal-00115674v1

A systematic nomenclature of chromosomal elements for hemiascomycete yeasts

Pascal Durrens , David James Sherman
Yeast, 2005, 22 (5), pp.337-342. ⟨10.1002/yea.1214⟩
Journal articles inria-00202435v1

Genolevures complete genomes provide data and tools for comparative genomics of hemiascomycetous yeasts.

David James Sherman , Pascal Durrens , Florian Iragne , Emmanuelle Beyne , Macha Nikolski , et al.
Nucleic Acids Research, 2006, 34 (Database issue), pp.D432-5. ⟨10.1093/nar/gkj160⟩
Journal articles hal-00118142v1
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Comparative genomics of protoploid Saccharomycetaceae

Jean-Luc Souciet , Bernard Dujon , Claude Gaillardin , Mark Johnston , Philippe V Baret , et al.
Genome Research, 2009, 19, pp.1696-1709. ⟨10.1101/gr.091546.109⟩
Journal articles inria-00407511v1

Oenococcus oeni genome plasticity associated with adaptation to wine, an extreme ecological niche

Elisabeth Bon , Arnaud Delaherche , Eric Bilhere , Cécile Miot-Sertier , Pascal Durrens , et al.
JOBIM-10èmes Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.121-122
Conference papers inria-00392020v1

The Génolevures online database

Tiphaine Martin , Pascal Durrens , Emmanuelle Beyne , Macha Nikolski , Florian Iragne , et al.
XXIIIrd International Conference on Yeast Genetics and Molecular Biology, Jul 2007, Melbourne, Australia. pp.S135
Conference papers inria-00401921v1

Genomic Exploration of the Hemiascomycetous Yeasts: 4. The genome of Saccharomyces cerevisiae revisited

Pascal Durrens , Elisabeth Bon , Cécile Neuvéglise , Gaëlle Blandin , Fredj Tekaia , et al.
FEBS Letters, 2000, 487, pp.31--36. ⟨10.1016/S0014-5793(00)02275-4⟩
Journal articles hal-00306551v1

Evolution of gene order in the genomes of two related yeast species

Gilles Fischer , Cécile Neuvéglise , Pascal Durrens , Claude Gaillardin , Bernard Dujon
Genome Research, 2001, 11, pp.2009-2019. ⟨10.1101/gr.212701⟩
Journal articles hal-00306595v1

Single nucleotide resolution QTL mapping of an enological trait from derived wild Saccharomyces cerevisiae strains

Philippe Marullo , Gael Yvert , M. Bely , Isabelle Masneuf-Pomarède , Pascal Durrens , et al.
FEMS Yeast Research, 2007, in press, pp.1295-1306
Journal articles hal-00306669v1

A novel link between a Rab GTPase and Rvs proteins: the yeast amphiphysin homologues

Nicolas Talarek , Axelle Balguerie , Michel Aigle , Pascal Durrens
Cell Biochemistry and Function, 2005, 23 (4), pp.253-266. ⟨10.1002/cbf.1146⟩
Journal articles istex hal-02134944v1

Génolevures: comparative genomics and molecular evolution of hemiascomycetous yeasts.

David Sherman , Pascal Durrens , Emmanuelle Beyne , Macha Nikolski , Jean-Luc Souciet
Nucleic Acids Research, 2004, 32 (Database issue), pp.D315-8. ⟨10.1093/nar/gkh091⟩
Journal articles inria-00407519v1

Genomic exploration of the hemiascomycetous yeasts: 3. Methods and strategies used for sequence analysis and annotation

F. Tekaia , Gallien Blandin , A. Malpertuy , B. Llorente , P. Durrens , et al.
FEBS Letters, 2000, 487, pp.17-30
Journal articles hal-02696093v1

The family based variability in protein family expansion.

Anasua Sarkar , Macha Nikolski , Pascal Durrens
International Journal of Bioinformatics Research and Applications, 2013, 9 (2), pp.121-33. ⟨10.1504/IJBRA.2013.052473⟩
Journal articles hal-00857374v1
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Deciphering the language of fungal pathogen recognition receptors

Witold Dyrka , Pascal Durrens , Sven J Saupe , Mathieu Paoletti , David James Sherman
EMBO Young Scientists Forum 2015, Jul 2015, Warsaw, Poland. , 2015
Poster communications hal-01171745v1
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Deciphering the language of fungal pathogen recognition receptors

Witold Dyrka , Pascal Durrens , Mathieu Paoletti , Sven J Saupe , David James Sherman
8th Symposium of the Polish Bioinformatics Society, Polish Bioinformatics Society, Sep 2015, Lublin, Poland
Conference papers hal-01203357v1
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Genome Sequence of the Yeast Clavispora lusitaniae Type Strain CBS 6936

Pascal Durrens , Christophe C. Klopp , Nicolas Biteau , Valérie Fitton-Ouhabi , Karine Dementhon , et al.
Genome Announcements, 2017, 5 (31), pp.e00724-17. ⟨10.1128/genomeA.00724-17⟩
Journal articles hal-01583349v1
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QTL dissection of Lag phase in wine fermentation reveals a new translocation responsible for Saccharomyces cerevisiae adaptation to sulfite.

Adrien Zimmer , Cécile Durand , Nicolás Loira , Pascal Durrens , David James Sherman , et al.
PLoS ONE, 2014, 9 (1), pp.e86298. ⟨10.1371/journal.pone.0086298⟩
Journal articles hal-00986680v1

Genome evolution in yeasts.

Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens , Serge Casaregola , et al.
Nature, 2004, 430 (6995), pp.35-44. ⟨10.1038/nature02579⟩
Journal articles istex hal-00104411v1
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Deciphering the language of fungal pathogen recognition receptors

Witold Dyrka , Pascal Durrens , Mathieu Paoletti , Sven J Saupe , David J Sherman
2014
Preprints, Working Papers, ... hal-01083421v1

Base de données Génolevures : génomique comparative des Hemiascomycetes

Tiphaine Martin , David James Sherman , Macha Nikolski , Jean-Luc Souciet , Pascal Durrens
Journée Ouvertes Biologie Informatique Mathématiques, JOBIM 2009, Jun 2009, Nantes, France. pp.181-182
Conference papers inria-00401915v1

The Génolevures website is designed around comparative genomic studies of hemiascomycetous yeasts

Tiphaine Martin , Pascal Durrens , Emmanuelle Beyne , Macha Nikolski , Florian Iragne , et al.
First German/French/European/ Meeting Yeast and Filamentous Fungi, May 2008, Strasbourg, France
Conference papers inria-00407631v1

Un polymorphisme suspect

Tiphaine Martin , Pascal Durrens
Unithé ou Café, Jun 2011, Talence, France
Conference papers inria-00614484v1

La banque de données en ligne Génolevures : les levures hémiascomycètes

Pascal Durrens
7ème colloque du BRG, Bureau des Ressources Génétiques, Oct 2008, Strasbourg, France
Conference papers hal-00648800v1

Gene Fusion and Fission Events in Fungal Genomes

Pascal Durrens , Macha Nikolski , David James Sherman
XXIIIrd International Conference on Yeast Genetics and Molecular Biology, Jul 2007, Melbourne, Australia. pp.S132
Conference papers inria-00352592v1
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Single QTL mapping and nucleotide-level resolution of a physiologic trait in wine Saccharomyces cerevisiae strains.

Philippe Marullo , Michel Aigle , Marina Bely , Isabelle Masneuf-Pomarede , Pascal Durrens , et al.
FEMS Yeast Research, 2007, 7 (7), pp.941-952. ⟨10.1111/j.1567-1364.2007.00252.x⟩
Journal articles ensl-00181998v1
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Pichia sorbitophila, an Interspecies Yeast Hybrid, Reveals Early Steps of Genome Resolution After Polyploidization

Véronique Leh Louis , Laurence Despons , Anne Friedrich , Tiphaine Martin , Pascal Durrens , et al.
G3, 2012, 2 (2), pp.299 - 311. ⟨10.1534/g3.111.000745⟩
Journal articles hal-00679348v1

Feedback in the management of genomic data in the GDR Génolevures

Tiphaine Martin , Pascal Durrens
ICY2012 13th International Congress on Yeasts, Aug 2012, Madison, United States
Conference papers hal-00734502v1