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Self-organization of a virtual multicellular organism by adding a shape model in the Cellular Potts Model.

S. Tripodi , Pascal Ballet , Vincent Rodin
Twelfth International Conference on the Synthesis and Simulation of Living Systems - ALIFE XII ., Aug 2010, Odense-Denmark., Denmark. pp.249-256
Conference papers hal-00662566v1

Une approche multi-agent pour la simulation en biologie cellulaire.

Pascal Ballet , Alain Pothet , Gradimir Misevic , Anne Jeannin-Girardon , Alexandra Fronville et al.
Matériologiques. Le vivant discret et continu, Editions Matériologiques, pp.155-194, 2013, Sciences & Philosophie, 978-2-919694-23-5
Book sections hal-00952323v1

Evolutions viables de formes par application de mécanismes cellulaires.

Abdoulaye Sarr , Alexandra Fronville , Laurent Lemarchand , Pascal Ballet , Vincent Rodin et al.
34ème séminaire de la société francophone de biologie théorique (SFBT), May 2014, SFBT, France
Conference papers hal-01119855v1

Scale-specific auxiliary multi-task contrastive learning for deep liver vessel segmentation

Amine Sadikine , Bogdan Badic , Jean-Pierre Tasu , Vincent Noblet , Pascal Ballet et al.
IEEE International Symposium on Biomedical Imaging, Apr 2023, Cartagena de Indias, Colombia
Conference papers hal-03953223v1

Bateaux du Nil en terre cuite pour des dieux et des hommes

Pascal Ballet , Patrice Pomey
Patrice Pomey. La batellerie égyptienne : archéologie, histoire, ethnographie, 34, Centre d'Études Alexandrins, p. 179-199, 2015, Études Alexandrines, 9782111298545
Book sections halshs-03246522v1

An Efficient Biomechanical Cell Model to Simulate Large Multi-cellular Tissue Morphogenesis: Application to Cell Sorting Simulation on GPU

Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
TPNC 2013, 2nd International Conference on the Theory and Practice of Natural Computing, Dec 2013, Cáceres, Spain. pp.96-107, ⟨10.1007/978-3-642-45008-2_8⟩
Conference papers istex hal-00952369v1

A Software Architecture for Multi-Cellular System Simulations on Graphics Processing Units

Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
Acta Biotheoretica, 2013, 61 (3), pp.317-327. ⟨10.1007/s10441-013-9187-3⟩
Journal articles hal-00952311v1

Hyperstructures 2008-2009

Victor Norris , Anne-Françoise Batto , Pascal Ballet , Georgia Barlovatz , Gilles Bernot et al.
modelling complex biological systems, 2009, Evry, France
Conference papers hal-03469577v1
Image document

3D individual based model for simultaneous growth and interaction of L. Monocytogenes and lactic acid bacteria

Gireg Desmeulles , Fabrice Harrouet , Dominique Thuault , Véronique Huchet , Pascal Redou et al.
9th International Conference on Predictive Modelling in Food (ICPMF9), Sep 2015, Rio de Janeiro, Brazil. pp.11-12
Conference papers hal-01339095v1
Image document

Diversity and survival of artificial lifeforms under sedimentation and random motion

Nicolas Glade , Olivier Bastien , Pascal Ballet
Theorie in den Biowissenschaften / Theory in Biosciences, 2017, 136 (364), pp.153. ⟨10.1007/s12064-017-0254-1⟩
Journal articles hal-01582506v1
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SimCells, an advanced software for multicellular modeling Application to tumoral and blood vessel co-development

Pascal Ballet
2018
Preprints, Working Papers, ... hal-01853293v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

Victor Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet et al.
Theory in Biosciences, 2011
Journal articles hal-03469597v1

Simulation of Multicellular Systems

Pascal Ballet , Alexandra Fronville , Anne Jeannin-Girardon , Jérémy Rivière , Vincent Rodin et al.
EURASC 2015, Oct 2015, Brest, France. , 2015
Poster communications hal-01407527v1

Bouto/Tell El-Faraʽin. Production et consommation de la céramique en milieu urbain de l’époque ptolémaïque aux débuts de l’islam

Pascal Ballet , Aude Simony , Julie Marchand , Loïc Mazou , Mikaël Pesenti et al.
Bulletin de liaison de la Céramique Egyptienne, 2019, 28, p. 55-88
Journal articles halshs-03127296v1

Multilayer cell proliferation with an adaptation of cellular Potts model

S. Tripodi , Pascal Ballet , Vincent Rodin
Journal of Biological Physics and Chemistry, 2010, 10 (1), pp.33-38
Journal articles hal-00668648v1
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Modelling and Simulating Complex Systems in Biology: introducing NetBioDyn

Pascal Ballet , Jérémy Rivière , Alain Pothet , Michaël Théron , Karine Pichavant et al.
Multi-Agent-Based Simulations Applied to Biological and Environmental Systems, IGI Global, 2017, 978-1-5225-1756-6. ⟨10.4018/978-1-5225-1756-6.ch006⟩
Book sections hal-01407520v1

Hyperstructures, genome analysis and I-Cells

Patrick Amar , Pascal Ballet , Georgia Barlovatz-Meimon , Arndt Benecke , Gilles Bernot et al.
Acta Biotheoretica, 2002, 50 (4), pp.357-373. ⟨10.1023/A:1022629004589⟩
Journal articles hal-00827467v1
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Mutational analysis-inspired algorithms for cells self-organization towards a dynamic under viability constraints

Alexandra Fronville , Abdoulaye Sarr , Pascal Ballet , Vincent Rodin
Self-Adaptive and Self-Organizing Systems (SASO), 2012 IEEE Sixth International Conference on, Sep 2012, Lyon, France. pp.181--186, ⟨10.1109/SASO.2012.15⟩
Conference papers hal-00781080v1

MorphoBlock Programming: a way to model and simulate morphogenesis of multicellular organisms.

Pascal Ballet , S. Tripodi , Vincent Rodin
Journal of Biological Physics and Chemistry, 2009, 9 (1), pp. 37-44
Journal articles hal-00664450v1

Computational Energetic Model of Morphogenesis Based on Multi-agent Cellular Potts Model

S. Tripodi , Pascal Ballet , Vincent Rodin
Advances in Computational Biology, 680 (7), Springer, pp.685-692, 2010, Advances in Experimental Medicine and Biology, ⟨10.1007/978-1-4419-5913-3_76⟩
Book sections hal-00628582v1

Computing with bacterial constituents, cells and populations: from bioputing to bactoputing

Vic Norris , Abdallah Zemirline , Patrick Amar , Jean Nicolas Audinot , Pascal Ballet et al.
Theorie in den Biowissenschaften / Theory in Biosciences, 2011, 130 (3), pp.211-228. ⟨10.1007/s12064-010-0118-4⟩
Journal articles hal-00643738v1
Image document

HYBRID DATA-BASED MODELLING IN ONCOLOGY: SUCCESSES, CHALLENGES AND HOPES

Angélique Stéphanou , Pascal Ballet , Gibin Powathil
Mathematical Modelling of Natural Phenomena, In press, ⟨10.1051/mmnp/2019026⟩
Journal articles hal-02405782v1

Usage de la simulation et de l'analyse morphologique pour l'étude de la dynamique cellulaire.

Alexandra Fronville , Abdoulaye Sarr , Pascal Ballet , Vincent Rodin
32ème séminaire de la société francophone de biologie théorique (SFBT), Jun 2012, St Flour, France
Conference papers hal-01119848v1
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Hybrid Modelling in Oncology: Sucesses, Challenges and Hopes

Angélique Stéphanou , Pascal Ballet , Gibin Powathil
Mathematical Modelling of Natural Phenomena, In press, ⟨10.1051/mmnp/2019026⟩
Journal articles hal-01980757v1

The BioDyn Language and Simulator. Application to an immune response and E. coli and phage interaction

Ballet Pascal , Abdallah Zemirline , Lionel Marce
Journal of Biological Physics and Chemistry, 2004, 4 (2), pp.93-101
Journal articles hal-00995885v1
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An efficient algorithm based on weak synchronization for distributed in virtuo biological experiments

Vincent Rodin , Gireg Desmeulles , Pascal Ballet , Pascal Redou , Christophe Le Gal et al.
Multiagent and Grid Systems - An International Journal of Cloud Computing , 2011, 7 (4-5), pp.159-182. ⟨10.3233/MGS-2011-0173⟩
Journal articles hal-00668699v1
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NetBioDyn, a smart Agent-Based software to intuitively model and simulate complex biological systems

Jérémy Rivière , Pascal Ballet , Vincent Rodin
Conference on Complex Systems (CCS), Sep 2016, Amsterdam, Netherlands. , 2016
Poster communications hal-01407523v1
Image document

From bioputing to bactoputing: computing with bacteria

Victor Norris , Abdallah Zemirline , Patrick Amar , Pascal Ballet , Eshel Ben Jacob et al.
Lille Spring School on Modelling Complex Biological Systems in the Context of Genomics, Apr 2008, Paris, France. pp.123-150
Conference papers hal-00340470v1

In silico study of mechanical stresses at the cellular level during tissue development.

Anne Jeannin-Girardon , Pascal Ballet , Vincent Rodin
BIBE 2013, 13th IEEE International Conference on BioInformatics and BioEngineering, Nov 2013, Chania, Greece. pp.1-4, ⟨10.1109/BIBE.2013.6701641⟩
Conference papers hal-00952346v1

Migration de cellules virtuelles déformables : Modélisation biomécanique multi-agent de la migration cellulaire

Pascal Ballet , Philippe Tracqui
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2007, 26 (1-2), pp.149-172
Journal articles hal-00193853v1