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Compareads: comparing huge metagenomic experiments

Nicolas Maillet , Claire Lemaitre , Rayan Chikhi , Dominique Lavenier , Pierre Peterlongo et al.
BMC Bioinformatics, 2012, 13 (Suppl 19), pp.S10. ⟨10.1186/1471-2105-13-S19-S10⟩
Journal articles hal-00784394v1
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Genomic evidence for global ocean plankton biogeography shaped by large-scale current systems

Daniel Richter , Romain Watteaux , Thomas Vannier , Jade Leconte , Paul Frémont et al.
Journal articles hal-02399723v1
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Compareads: comparing huge metagenomic experiments

Nicolas Maillet , Claire Lemaitre , Rayan Chikhi , Dominique Lavenier , Pierre Peterlongo et al.
13e édition des Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. 2012
Poster communications hal-00760332v1

Assemblathon 1: A competitive assessment of de novo short read assembly methods

Dent A. Earl , Keith Bradnam , John St. John , Aaron Darling , Dawei Lin et al.
Genome Research, 2011, ⟨10.1101/gr.126599.111⟩
Journal articles inria-00637571v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier et al.
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Journal articles hal-02999805v1
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Genome-wide patterns of divergence during speciation: the lake whitefish case study

S. Renaut , N. Maillet , E. Normandeau , C. Sauvage , N. Derome et al.
Philosophical Transactions of the Royal Society B: Biological Sciences, 2012, 367 (1587), pp.354-363. ⟨10.1098/rstb.2011.0197⟩
Journal articles hal-02612408v1
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COMMET: comparing and combining multiple metagenomic datasets

Nicolas Maillet , Guillaume Collet , Thomas Vannier , Dominique Lavenier , Pierre Peterlongo et al.
IEEE BIBM 2014, Nov 2014, Belfast, United Kingdom
Conference papers hal-01080050v1
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Compareads: comparing huge metagenomic experiments

Nicolas Maillet , Claire Lemaitre , Rayan Chikhi , Dominique Lavenier , Pierre Peterlongo et al.
RECOMB Comparative Genomics 2012, Oct 2012, Niterói, Brazil
Conference papers hal-00720951v1
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Rapid Peptides Generator: fast and efficient in silico protein digestion

Nicolas Maillet
NAR Genomics and Bioinformatics, 2020, 2 (1), ⟨10.1093/nargab/lqz004⟩
Journal articles hal-02612459v1
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Rapid Peptides Generator: fast and efficient in silico protein digestion. RPG: a fast and efficient software to predict cleaving site of common and novel enzymes

Nicolas Maillet
Jobim - Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster communications hal-02612502v1
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Comparaison de novo de données de séquençage issues de très grands échantillons métagénomiques : application sur le projet Tara Oceans

Nicolas Maillet
Autre [cs.OH]. Université Rennes 1, 2013. Français. ⟨NNT : 2013REN1S097⟩
Theses tel-00941922v1
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Marine diatoms change their gene expression profile when exposed to microscale turbulence under nutrient replete conditions

Alberto Amato , Gianluca Dell’aquila , Francesco Musacchia , Rossella Annunziata , Ari Ugarte et al.
Scientific Reports, 2016, 7 (1), pp.347A-348A. ⟨10.1038/s41598-017-03741-6⟩
Journal articles hal-01528507v1
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Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

Keith Bradnam , Joseph Fass , Anton Alexandrov , Paul Baranay , Michael Bechner et al.
GigaScience, 2013, 2 (1), pp.10. ⟨10.1186/2047-217X-2-10⟩
Journal articles hal-00868822v1
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Listeriomics: an Interactive Web Platform for Systems Biology of Listeria

Christophe Bécavin , Mikael Koutero , Nicolas Tchitchek , Franck Cerutti , Pierre Lechat et al.
mSystems, 2017, 2 (2), pp.e00186-16. ⟨10.1128/mSystems.00186-16⟩
Journal articles pasteur-01574970v1