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Extracellular membrane vesicles harbouring viral genomes

Marie Gaudin , Mart Krupovic , Evelyne Marguet , Emilie Gauliard , Virginija Cvirkaite-Krupovic , et al.
Environmental Microbiology, 2014, 16 (4), pp.1167-1175. ⟨10.1111/1462-2920.12235⟩
Journal articles istex hal-03065173v1
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Adnaviria: a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes

Mart Krupovic , Jens H Kuhn , Fengbin Wang , Diana P Baquero , Valerian V Dolja , et al.
Journal of Virology, 2021, 95 (15), pp.e00673-21. ⟨10.1128/JVI.00673-21⟩
Journal articles pasteur-03284792v1

The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements.

Mart Krupovic , Simonetta Gribaldo , Dennis H Bamford , Patrick Forterre
Molecular Biology and Evolution, 2010, 27 (12), pp.2716-32. ⟨10.1093/molbev/msq161⟩
Journal articles hal-00555513v1
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Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity

Mart Krupovic , Kira Makarova , Patrick Forterre , David Prangishvili , Eugene Koonin
BMC Biology, 2014, 12 (1), pp.36. ⟨10.1186/1741-7007-12-36⟩
Journal articles pasteur-01001796v1
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Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials

Thomas S. Postler , Anna N. Clawson , Gaya K. Amarasinghe , Christopher F. Basler , Sbina Bavari , et al.
Systematic Biology, 2017, 66 (3), pp.463-473. ⟨10.1093/sysbio/syw096⟩
Journal articles hal-01917839v1

Taxonomy of the order Mononegavirales: update 2018

Gaya K. Amarasinghe , Nidia G. Aréchiga Ceballos , Ashley C. Banyard , Christopher F. Basler , Sina Bavari , et al.
Archives of Virology, 2018, 163 (8), pp.2283-2294. ⟨10.1007/s00705-018-3814-x⟩
Journal articles hal-01911194v1
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Sequence motifs recognized by the casposon integrase of Aciduliprofundum boonei

Pierre Béguin , Yankel Chekli , Guennadi Sezonov , Patrick Forterre , Mart Krupovic
Nucleic Acids Research, 2019, 47 (12), pp.6386-6395. ⟨10.1093/nar/gkz447⟩
Journal articles hal-02164044v1
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Archaeal DNA-import apparatus is homologous to bacterial conjugation machinery

Leticia C Beltran , Virginija Cvirkaite-Krupovic , Jessalyn Miller , Fengbin Wang , Mark a B Kreutzberger , et al.
Nature Communications, 2023, 14, pp.666. ⟨10.1038/s41467-023-36349-8⟩
Journal articles pasteur-03977175v1

The Sulfolobus rod-shaped virus 2 encodes a prominent structural component of the unique virion release system in Archaea.

Tessa E F Quax , Mart Krupovic , Soizick Lucas , Patrick Forterre , David Prangishvili
Virology, 2010, 404 (1), pp.1-4. ⟨10.1016/j.virol.2010.04.020⟩
Journal articles hal-00596062v1
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Tracing the invertebrate herpesviruses in the global sequence datasets

Umberto Rosani , Morgan Gaia , Tom O Delmont , Mart Krupovic
Frontiers in Marine Science, 2023, 10, pp.1159754. ⟨10.3389/fmars.2023.1159754⟩
Journal articles pasteur-04162270v1

The enigmatic archaeal virosphere

David Prangishvili , Dennis Bamford , Patrick Forterre , Jaime Iranzo , Eugene Koonin , et al.
Nature Reviews Microbiology, 2017, 15 (12), pp.724-739. ⟨10.1038/nrmicro.2017.125⟩
Journal articles pasteur-01977353v1
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Fusion of a superfamily 1 helicase and an inactivated DNA polymerase is a signature of common evolutionary history of Polintons, polinton-like viruses, Tlr1 transposons and transpovirons

Mart Krupovic , Natalya Yutin , Eugene Koonin
Virus Evolution, 2016, 2 (1), pp.vew019. ⟨10.1093/ve/vew019⟩
Journal articles pasteur-01977355v1

Virology: A parasite's parasite saves host's neighbours

Eugene V. Koonin , Mart Krupovic
Nature, 2016, 540 (7632), pp.204-205. ⟨10.1038/540204a⟩
Journal articles pasteur-01977368v1
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The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing

Jaime Iranzo , Mart Krupovic , Eugene V. Koonin
mBio, 2016, 7 (4), pp.e00978-16. ⟨10.1128/mBio.00978-16⟩
Journal articles pasteur-01977375v1
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Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis

Natalya Yutin , Disa Bäckström , Thijs Ettema , Mart Krupovic , Eugene Koonin
Virology Journal, 2018, 15 (1), pp.67. ⟨10.1186/s12985-018-0974-y⟩
Journal articles pasteur-01977335v1
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Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses

Mart Krupovic , Jonas Blomberg , John Coffin , Indranil Dasgupta , Hung Fan , et al.
Journal of Virology, 2018, 92 (12), pp.e00515-18. ⟨10.1128/JVI.00515-18⟩
Journal articles pasteur-01977336v1
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Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease

Mart Krupovic , Virginija Cvirkaite-Krupovic , David Prangishvili , Eugene V. Koonin
Biology Direct, 2015, 10 (65), ⟨10.1186/s13062-015-0093-2⟩
Journal articles pasteur-01977383v1

A classification system for virophages and satellite viruses

Mart Krupovic , Jens Kuhn , Matthias Fischer
Archives of Virology, 2016, 161 (1), pp.233--247. ⟨10.1007/s00705-015-2622-9⟩
Journal articles pasteur-01977384v1
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Plant viruses of the Amalgaviridae family evolved via recombination between viruses with double-stranded and negative-strand RNA genomes

Mart Krupovic , Valerian Dolja , Eugene V. Koonin
Biology Direct, 2015, 10 (12), ⟨10.1186/s13062-015-0047-8⟩
Journal articles pasteur-01977387v1

Revealing virus-host interplay

Mart Krupovic , Dennis H. Bamford
Science, 2011, 333 (6038), pp.45-46. ⟨10.1126/science.1208557⟩
Journal articles pasteur-01977411v1

Protein A33 responsible for antibody-resistant spread of Vaccinia virus is homologous to C-type lectin-like proteins

Mart Krupovic , Virginija Krupovič , Dennis H. Bamford
Virus Research, 2010, 151 (1), pp.97-101. ⟨10.1016/j.virusres.2010.03.004⟩
Journal articles pasteur-01977414v1

Virus–Host Interactions in Archaea

Diana Paola Baquero , David Prangishvili , Mart Krupovic
Dennis H. Bamford; Mark Zuckerman. Encyclopedia of Virology, 4, Elsevier, pp.387-399, 2021, 978-0-12-814516-6. ⟨10.1016/B978-0-12-814515-9.00063-1⟩
Book sections pasteur-03165504v1
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ICTV Virus Taxonomy Profile: Metaviridae

Carlos Llorens , Beatriz Soriano , Mart Krupovic , Ictv Report Consortium
Journal of General Virology, 2020, 101 (11), pp.1131 - 1132. ⟨10.1099/jgv.0.001509⟩
Journal articles pasteur-03112957v1
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Structure of a filamentous virus uncovers familial ties within the archaeal virosphere

Fengbin Wang , Diana P Baquero , Zhangli Su , Tomasz Osinski , David Prangishvili , et al.
Virus Evolution, 2020, 6 (1), pp.veaa023. ⟨10.1093/ve/veaa023⟩
Journal articles pasteur-02568496v1

Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

Evelien M. Adriaenssens , Johannes Wittmann , Jens H. Kuhn , Dann Turner , Matthew Sullivan , et al.
Archives of Virology, 2018, 163 (4), pp.1125-1129. ⟨10.1007/s00705-018-3723-z⟩
Journal articles pasteur-01977346v1
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Nanohaloarchaea as beneficiaries of xylan degradation by haloarchaea

Violetta La Cono , Enzo Messina , Oleg Reva , Francesco Smedile , Gina La Spada , et al.
Microbial Biotechnology, 2023, 16 (9), pp.1803-1822. ⟨10.1111/1751-7915.14272⟩
Journal articles pasteur-04186481v1

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures

Ying Liu , David Brandt , Sonoko Ishino , Yoshizumi Ishino , Eugene V. Koonin , et al.
Environmental Microbiology, 2018, ⟨10.1111/1462-2920.14479⟩
Journal articles pasteur-01977325v1
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ICTV Virus Taxonomy Profile: Globuloviridae

David Prangishvili , Mart Krupovic , Ictv Report Consortium
Journal of General Virology, 2018, 99 (10), pp.1357-1358. ⟨10.1099/jgv.0.001123⟩
Journal articles pasteur-01977328v1

Casposons: mobile genetic elements that gave rise to the CRISPR-Cas adaptation machinery

Mart Krupovic , Pierre Béguin , Eugene Koonin
Current Opinion in Microbiology, 2017, 38, pp.36-43. ⟨10.1016/j.mib.2017.04.004⟩
Journal articles pasteur-01977358v1
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A network perspective on the virus world

Jaime Iranzo , Mart Krupovic , Eugene Koonin
Communicative and Integrative Biology, 2017, 10 (2), pp.e1296614. ⟨10.1080/19420889.2017.1296614⟩
Journal articles pasteur-01977360v1