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Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis
Sebastien Breurec
,
Alexis Criscuolo
,
Laure Diancourt
,
Olaya Rendueles
,
Mathias Vandenbogaert
,
et al.
Journal articles
hal-02613124v1
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.
Marie Touchon
,
Claire Hoede
,
Olivier Tenaillon
,
Valérie Barbe
,
Simon Baeriswyl
,
et al.
Journal articles
hal-00390293v1
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Inhibition of NHEJ repair by type II-A CRISPR-Cas systems in bacteria
Aude Bernheim
,
Alicia Calvo-Villamañán
,
Clovis Basier
,
Lun Cui
,
Eduardo P C Rocha
,
et al.
Journal articles
pasteur-01967501v1
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Genetic exchanges are more frequent in bacteria encoding capsules
Olaya Rendueles
,
Jorge a Moura de Sousa
,
Aude Bernheim
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-02012595v1
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From DNA sequence analysis to modeling replication in the human genome.
Edward-Benedict Brodie of Brodie
,
Samuel Nicolay
,
Marie Touchon
,
Benjamin Audit
,
Yves d'Aubenton-Carafa
,
et al.
Physical Review Letters, 2005, 24 (94), pp.248103
Journal articles
ensl-00175517v1
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A Module Located at a Chromosomal Integration Hot Spot Is Responsible for the Multidrug Resistance of a Reference Strain from Escherichia coli Clonal Group A
Mathilde Lescat
,
Alexandra Calteau
,
Claire Hoede
,
Valérie Barbe
,
Marie Touchon
,
et al.
Journal articles
hal-03612468v1
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Identification of protein secretion systems in bacterial genomes
Sophie S. Abby
,
Jean Cury
,
Julien Guglielmini
,
Bertrand Néron
,
Marie Touchon
,
et al.
Journal articles
pasteur-01374967v1
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Manipulating or Superseding Host Recombination Functions: A Dilemma That Shapes Phage Evolvability
Marie Bobay
,
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
pasteur-01374955v1
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Genome diversification via genetic exchanges between temperate and virulent bacteriophages
Jorge A. Moura de Sousa
,
Eugen Pfeifer
,
Marie Touchon
,
Eduardo P. C. Rocha
2020
Preprints, Working Papers, ...
hal-02988810v1
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Complete genome sequence of Flavobacterium indicum GPSTA100-9T, isolated from warm spring water
Paul Barbier
,
Armel A. Houel
,
Valentin Loux
,
Julie Poulain
,
Jean Francois J. F. Bernardet
,
et al.
Journal articles
hal-02643519v1
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CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins
David Couvin
,
Aude Bernheim
,
Claire Toffano-Nioche
,
Marie Touchon
,
Juraj Michalik
,
et al.
Journal articles
pasteur-02098389v1
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Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis
Pedro Oliveira
,
John Ribis
,
Elizabeth Garrett
,
Dominika Trzilova
,
Alex Kim
,
et al.
Journal articles
hal-02988691v1
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A PNPase dependent CRISPR System in Listeria.
Nina Sesto
,
Marie Touchon
,
José Marques Andrade
,
Jiro Kondo
,
Eduardo P C Rocha
,
et al.
Journal articles
pasteur-01145428v1
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Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain
Amandine Perrin
,
Elise Larsonneur
,
Ainsley Nicholson
,
David Edwards
,
Kristin Gundlach
,
et al.
Journal articles
hal-02613118v1
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The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
pasteur-01374940v1
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Atypical organizations and epistatic interactions of CRISPRs and cas clusters in genomes and their mobile genetic elements
Aude Bernheim
,
David Bikard
,
Marie Touchon
,
Eduardo Rocha
Journal articles
pasteur-02626502v1
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Replication-associated strand asymmetries in mammalian genomes: toward detection of replication origins.
Marie Touchon
,
Samuel Nicolay
,
Benjamin Audit
,
Edward-Benedict Brodie of Brodie
,
Yves d'Aubenton-Carafa
,
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2005, 28 (102), pp.9836-41. ⟨10.1073/pnas.0500577102⟩
Journal articles
ensl-00175525v1
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A matter of background: DNA repair pathways as a possible cause for the sparse distribution of CRISPR-Cas systems in bacteria
Aude Bernheim
,
David Bikard
,
Marie Touchon
,
Eduardo P C Rocha
Philosophical Transactions of the Royal Society B: Biological Sciences, 2019, 374 (1772), pp.20180088. ⟨10.1098/rstb.2018.0088⟩
Journal articles
hal-02329742v1
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
Alexandra Moura
,
Alexis Criscuolo
,
Hannes Pouseele
,
Mylène M. Maury
,
Alexandre Leclercq
,
et al.
Journal articles
pasteur-01415883v1
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Bacteria have numerous distinctive groups of phage-plasmids with conserved phage and variable plasmid gene repertoires
Eugen Pfeifer
,
Jorge A Moura de Sousa
,
Marie Touchon
,
Eduardo P. C. Rocha
Journal articles
hal-03357369v1
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Identification and analysis of integrons and cassette arrays in bacterial genomes
Jean Cury
,
Thomas Jové
,
Marie Touchon
,
Bertrand Néron
,
Eduardo Pc Rocha
Journal articles
pasteur-01374968v1
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Regulation of genetic flux between bacteria by restriction–modification systems
Pedro H. Oliveira
,
Marie Touchon
,
Eduardo P. C. Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (20), pp.5658 - 5663. ⟨10.1073/pnas.1603257113⟩
Journal articles
pasteur-01374969v1
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Comparative genomic analysis of Acinetobacter strains isolated from murine colonic crypts
Azadeh Saffarian
,
Marie Touchon
,
Céline Mulet
,
Régis R. Tournebize
,
Virginie Passet
,
et al.
Journal articles
pasteur-01570221v1
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Abundance and co-occurrence of extracellular capsules increase environmental breadth: Implications for the emergence of pathogens
Olaya Rendueles
,
Marc Garcia-Garcerà
,
Bertrand Néron
,
Marie Touchon
,
Eduardo P C Rocha
Journal articles
pasteur-01578349v1
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MacSyFinder v2: Improved modelling and search engine to identify molecular systems in genomes
Bertrand Néron
,
Rémi Denise
,
Charles Coluzzi
,
Marie Touchon
,
Eduardo P.C. Rocha
,
et al.
Journal articles
pasteur-04060331v2
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Embracing the enemy: the diversification of microbial gene repertoires by phage-mediated horizontal gene transfer
Marie Touchon
,
Jorge A Moura de Sousa
,
Eduardo P. C. Rocha
Journal articles
pasteur-03111100v1
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Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Marie Touchon
,
Amandine Perrin
,
Jorge A Moura de Sousa
,
Belinda Vangchhia
,
Samantha Burn
,
et al.
Journal articles
pasteur-02866790v2
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Parallels between experimental and natural evolution of legume symbionts
Camille Clerissi
,
Marie Touchon
,
Delphine Capela
,
Mingxing Tang
,
Stéphane Cruveiller
,
et al.
Journal articles
cea-01880286v1
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Metabolic diversity of the emerging pathogenic lineages ofKlebsiella pneumoniae
Camille Blin
,
Virginie Passet
,
Marie Touchon
,
Eduardo P. C. Rocha
,
Sylvain Brisse
Journal articles
pasteur-04076001v1
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The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences.
Marie Touchon
,
Jean Cury
,
Eun-Jeong Yoon
,
Lenka Krizova
,
Gustavo C Cerqueira
,
et al.
Journal articles
pasteur-01132634v1
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