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Negative Sampling and Rule Mining for Explainable Link Prediction in Knowledge Graphs

Kamrul Islam , Sabeur Aridhi , Malika Smaïl-Tabbone
Knowledge-Based Systems, 2022, 250, pp.109083. ⟨10.1016/j.knosys.2022.109083⟩
Journal articles hal-03684205v1

Contributions from the 2018 Literature on Bioinformatics and Translational Informatics

Malika Smail-Tabbone , Bastien Rance
IMIA Yearbook of Medical Informatics, 2019, 28 (01), pp.190-193. ⟨10.1055/s-0039-1677945⟩
Journal articles hal-02413623v1
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BR-Explorer: A sound and complete FCA-based retrieval algorithm (Poster)

Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
4th International Conference on Formal Concept Analysis - ICFCA 2006, Feb 2006, Dresden/Germany
Conference papers inria-00103947v1
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BR-Explorer: An FCA-based algorithm for Information Retrieval

Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
Fourth International Conference On Concept Lattices and Their Applications - CLA 2006, Oct 2006, Hammamet/Tunisia
Conference papers inria-00103913v1
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Prédiction de défauts dans les arbres du parc végétal Grenoblois et préconisations pour les futures plantations

Yelen Per , Kevin Dalleau , Malika Smaïl-Tabbone
EGC 2017 - Extraction et Gestion des Connaissances, Jan 2017, Grenoble, France. pp.237-248
Conference papers hal-01611504v1

Long chain alkylphenol mixture promotes mammary epithelial cell metaplastic phenotype through an estrogen receptor alpha 36 mediated mechanism

Clémence Chamard , Emmanuel Bresso , Taha Boukhobza , Marie-Dominique Devignes , Malika Smaïl-Tabbone et al.
23rd Biennial Congress of the European Association for Cancer Research, EACR-23, Jul 2014, Munich, Germany. pp.S118, ⟨10.1016/S0959-8049(14)50435-2⟩
Conference papers hal-01095429v1
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ILP for Mining Linked Open Data: a biomedical Case Study

Gabin Personeni , Simon Daget , Céline Bonnet , Philippe Jonveaux , Marie-Dominique Devignes et al.
The 24th International Conference on Inductive Logic Programming (ILP 2014), Sep 2014, Nancy, France
Conference papers hal-01095597v1

Analyse de données transcriptomiques: Modélisation floue de profils d'expression différentielle et analyse fonctionnelle.

Sidahmed Benabderrahmane , Marie-Dominique Devignes , Malika Smaïl-Tabbone , O. Poch , Amedeo Napoli et al.
Actes du XXVIIième congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2009, IRIT-Toulouse, May 2009, Toulouse, France. pp.413-428
Conference papers inria-00394530v1

Spatial clustering of protein binding sites for template based protein docking

Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Bioinformatics, 2011, 27 (20), pp.2820-2827. ⟨10.1093/bioinformatics/btr493⟩
Journal articles inria-00617921v1
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Mining Electronic Health Records to Validate Knowledge in Pharmacogenomics

Adrien Coulet , Malika Smaïl-Tabbone
ERCIM News, 2016, ERCIM News 104, Special theme: Tackling Big Data in the Life Sciences, 104, pp.56
Journal articles hal-01369501v1
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Mining Linked Open Data: A Case Study with Genes Responsible for Intellectual Disability

Gabin Personeni , Simon Daget , Céline Bonnet , Philippe Jonveaux , Marie-Dominique Devignes et al.
Data Integration in the Life Sciences - 10th International Conference, DILS 2014, Jul 2014, Lisbon, Portugal. pp.16 - 31, ⟨10.1007/978-3-319-08590-6_2⟩
Conference papers hal-01095591v1
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Classification et interrogation de sources de données biologiques

Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
Revue des Nouvelles Technologies de l'Information, 2005, Extraction des connaissances : Etat et perspectives, pp.43-47
Journal articles inria-00103937v1
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Extraction d'association d'EIM à partir de dossiers patients : expérimentation avec les structures de patrons et les ontologies

Gabin Personeni , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone , Adrien Coulet et al.
Deuxième Atelier sur l'Intelligence Artificielle et la Santé, Jun 2016, Montpellier, France
Conference papers hal-01391172v1

A KDD Approach for Designing Filtering Strategies to Improve Virtual Screening

Léo Ghemtio , Malika Smail-Tabbone , Marie-Dominique Devignes , Michel Souchet , Bernard Maigret et al.
KDIR - International Conference on Knowledge Discovery and Information Retrieval, Oct 2009, Madeira, Portugal
Conference papers inria-00433475v1
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Towards an automatic conversion from SBML core to SBML qual

Athénaïs Vaginay , Malika Smail-Tabbone , Taha Boukhobza
Journées Ouvertes Biologie, Informatique et Mathématiques, JOBIM 2019, Jul 2019, Nantes, France
Conference papers hal-02407443v1
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Formal Concept Analysis Applied to Transcriptomic Data

Mehwish Alam , Adrien Coulet , Amedeo Napoli , Malika Smaïl-Tabbone
The Ninth International Conference on Concept Lattices and Their Applications - CLA 2012, Oct 2012, Fuengirola (Málaga), Spain
Conference papers hal-00761003v1
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From quantitative SBML models to boolean networks

Athénaïs Vaginay , Taha Boukhobza , Malika Smaïl-Tabbone
10th International Conference on Complex Networks and their Applications, CNA 2021, Nov 2021, Madrid, Spain
Conference papers hal-03481396v1

Raisonnement à base de cas pour une recherche évolutive d'information : eprototype cabri-n : vers la définition d'un cadre d'acquisition de connaissances

Malika Smaïl-Tabbone
Autre. Université Henri Poincaré - Nancy 1, 1994. Français. ⟨NNT : 1994NAN10409⟩
Theses tel-01754195v1

Long chain alkylphenol mixture promotes breast cancer initiation and progression through an ERα36-mediated mechanism

Clémence Chamard-Jovenin , Amand Chesnel , Chloé Morel , Marie-Dominique Devignes , Malika Smaïl-Tabbone et al.
2nd French Workshop on Endocrine disruption in wildlife and human health, Jan 2016, Paris, France
Conference papers hal-01320688v1

Services for a Genomics Open Distributed Environment

Nacer Boudjlida , Malika Smaïl-Tabbone , Marie-Dominique Devignes
XEWA'2000: IEEE Workshop on XML-Enabled Wide Area Search in Bioinformatics, 2000, League City, Texas, 2 p
Conference papers inria-00099248v1

Ontology-based knowledge discovery in pharmacogenomics.

Adrien Coulet , Malika Smaïl-Tabbone , Amedeo Napoli , Marie-Dominique Devignes
Hamid R. Arabnia and Quoc-Nam Tran. Software Tools and Algorithms for Biological Systems, 696, Springer, pp.357-66, 2011, Advances in Experimental Medicine and Biology, 978-1-4419-7046-6. ⟨10.1007/978-1-4419-7046-6_36⟩
Book sections inria-00585072v1

Comparison of three preprocessing filters efficiency in virtual screening: identification of new putative LXR$\beta$ regulators as a test case

Leo Ghemtio , Marie-Dominique Devignes , Malika Smaïl-Tabbone , Michel Souchet , Vincent Leroux et al.
Journal of Chemical Information and Modeling, 2010, 50 (5), pp.701-715. ⟨10.1021/ci900356m⟩
Journal articles hal-00547968v1

Intelligent access to genomic sources on the web

Marie-Dominique Devignes , Nizar Messai , Amedeo Napoli , Shazia Osman , Malika Smaïl-Tabbone et al.
W3C Workshop on Semantic Web for Life Sciences, Oct 2004, Cambridge, Massachusetts USA
Conference papers inria-00000153v1
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Treillis de concepts et ontologies pour l'interrogation d'un annuaire de sources de données biologiques (BioRegistry)

Nizar Messai , Marie-Dominique Devignes , Malika Smaïl-Tabbone , Amedeo Napoli
Actes du XXIIIème congrès Informatique des Organisations et Systèmes d'information et de décision - INFORSID 2005, May 2005, Grenoble/France
Conference papers inria-00000101v1

Using Domain Knowledge to Guide Lattice-based Complex Data Exploration

Nizar Messai , Marie-Dominique Devignes , Amedeo Napoli , Malika Smaïl-Tabbone
19th European Conference on Artificial Intelligence - ECAI 2010, Aug 2010, Lisbon, Portugal. pp.847--852, ⟨10.3233/978-1-60750-606-5-847⟩
Conference papers inria-00545545v1
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Unsupervised extremely randomized trees

Kevin Dalleau , Miguel Couceiro , Malika Smaïl-Tabbone
PAKDD 2018 - The 22nd Pacific-Asia Conference on Knowledge Discovery and Data Mining, May 2018, Melbourne, Australia
Conference papers hal-01667317v2

Long chain alkyphenol mixture promotes breast cancer initiation and progression through an ER$\alpha$36-mediated mechanism

Clémence Chamard-Jovenin , Amand Chesnel , Chloé Morel , Marie-Dominique Devignes , Malika Smaïl-Tabbone et al.
2nd International Symposium of the Cancer Research Center of Lyon, Sep 2015, Lyon, France
Conference papers hal-01320740v1
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Tackling scalability issues in mining path patterns from knowledge graphs: a preliminary study

Pierre Monnin , Emmanuel Bresso , Miguel Couceiro , Malika Smaïl-Tabbone , Amedeo Napoli et al.
ALGOS 2020 - 1st International Conference on Algebras, Graphs and Ordered Sets, Aug 2020, Nancy, France
Conference papers hal-02913224v1
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Discovering associations between adverse drug events using pattern structures and ontologies

Gabin Personeni , Emmanuel Bresso , Marie-Dominique Devignes , Michel Dumontier , Malika Smaïl-Tabbone et al.
Journal of Biomedical Semantics, 2017, 93, pp.539 - 546. ⟨10.1186/s13326-017-0137-x⟩
Journal articles hal-01576341v1

KBDOCK 2013: A spatial classification of 3D protein domain family interactions

Anisah Ghoorah , Marie-Dominique Devignes , Malika Smaïl-Tabbone , David Ritchie
Nucleic Acids Research, 2014, 42 (D1), pp.389-395. ⟨10.1093/nar/gkt1199⟩
Journal articles hal-00920612v1