R{NA} secondary structure comparison: exact analysis of the {Z}hang-{S}hasha tree edit algorithm
Serge Dulucq
,
Laurent Tichit
Theoretical Computer Science , 2003, 306, pp.471--484
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hal-00307518v1
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Assessment of network module identification across complex diseases
Sarvenaz Choobdar
,
Mehmet Ahsen
,
Jake Crawford
,
Mattia Tomasoni
,
Tao Fang
et al.
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hal-02333148v1
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Designing optimal-and fast-on-average pattern matching algorithms
Gilles Didier
,
Laurent Tichit
Journal of Discrete Algorithms , 2017, 42, pp.45-60
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hal-01310165v1
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Prediction of Disease-associated Genes by advanced Random Walk with Restart on Multiplex and Heterogeneous Biological Networks
Alberto Valdeolivas
,
Elisabeth Remy
,
Laurent Tichit
,
Gaëlle Odelin
,
Claire Navarro
et al.
JOBIM 2017 , Jul 2017, Lille, France
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hal-03582849v1
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ICeE an interface for C. elegans experiments
Fr Montanana
,
Julien Renaud
,
Philippe Vaglio
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Lisa Matthews
,
Laurent Tichit
et al.
Journal articles
hal-01261848v1
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ModClust: a Cytoscape plugin for modularity-based clustering of networks
Laurent Tichit
,
Philippe Gambette
,
Alain Guénoche
MARAMI 2011 , Oct 2011, Grenoble, France
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hal-01261856v1
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SimCT: a generic tool to visualize ontology-based relationships for biological objects.
Carl Herrmann
,
Sèverine Bérard
,
Laurent Tichit
Journal articles
halsde-00454253v1
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Logical modelling of cellular decision processes with GINsim
Claudine Chaouiya
,
Aurélien Naldi
,
Lionel Spinelli
,
Pedro Monteiro
,
Duncan Berenguier
et al.
JOBIM 2012 , Jul 2012, Rennes, France
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hal-01261855v1
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A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans
Ilka Engelmann
,
Aurelien Griffon
,
Laurent Tichit
,
Fr Montañana-Sanchis
,
Guilin Wang
et al.
Journal articles
hal-01261853v1
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Dispersion sémantique dans des familles morpho-phonologiques : éléments théoriques et empiriques
Núria Gala
,
Véronique Rey
,
Laurent Tichit
Traitement Automatique des Langues (TALN 2009) , Jun 2009, Senlis, France
Conference papers
hal-03198420v1
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MultiVERSE: a multiplex and multiplex-heterogeneous network embedding approach
Léo Pio-Lopez
,
Alberto Valdeolivas
,
Laurent Tichit
,
Élisabeth Remy
,
Anaïs Baudot
et al.
Journal articles
hal-03359094v2
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Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs)
Michaël Pierrelée
,
Ana Reynders
,
Fabrice Lopez
,
Aziz Moqrich
,
Laurent Tichit
et al.
Journal articles
hal-03358832v1
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Inferring cell cycle phases from a partially temporal network of protein interactions
Maxime Lucas
,
Arthur Morris
,
Alex Townsend-Teague
,
Laurent Tichit
,
Bianca Habermann
et al.
2021
Preprints, Working Papers, ...
hal-03451793v1
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An Integrative Database of β-Lactamase Enzymes: Sequences, Structures, Functions, and Phylogenetic Trees
Vivek Keshri
,
Seydina Diene
,
Adrien Estienne
,
Justine Dardaillon
,
Olivier Chabrol
et al.
Journal articles
hal-02159541v1
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A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes
Olivier Zugasti
,
Nishant Thakur
,
Jerome Belougne
,
Barbara Squiban
,
C. Léopold Kurz
et al.
Journal articles
hal-01438537v1
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Local Similarity Between Quotiented Ordered Trees
Pascal Ferraro
,
Aïda Ouangraoua
,
Laurent Tichit
,
Serge Dulucq
Journal of Discrete Algorithms , 2007, 5 (1), pp.23-35
Journal articles
hal-00307119v1
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Random walk with restart on multiplex and heterogeneous biological networks
Alberto Valdeolivas
,
Laurent Tichit
,
Claire L. Navarro
,
Sophie Perrin
,
Gaelle Odelin
et al.
Journal articles
hal-01946427v1
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Clone Mapper: An Online Suite of Tools for RNAi Experiments in Caenorhabditis elegans
Nishant Thakur
,
Nathalie Pujol
,
Laurent Tichit
,
Jonathan J. Ewbank
Journal articles
hal-01261841v1
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An integrated analysis tool reveals intrinsic biases in gene set enrichment
Nishant Thakur
,
Nathalie Pujol
,
Jacques van Helden
,
Robert H Waterston
,
Ladeana W. Hillier
et al.
2021
Preprints, Working Papers, ...
hal-03374674v1
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Clone Mapper: An Online Suite of Tools for RNAi Experiments in Caenorhabditis elegans
Nishant Thakur
,
Nathalie Pujol
,
Laurent Tichit
,
Jonathan J. Ewbank
Journal articles
hal-01243281v1
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Population-based meta-heuristic for active modules identification
Leandro Corrêa
,
Denis Pallez
,
Laurent Tichit
,
Olivier Soriani
,
Claude Pasquier
et al.
10th International Conference on Computational Systems-Biology and Bioinformatics (CSBio 2019) , Dec 2019, Nice, France. pp.1-8,
⟨10.1145/3365953.3365957⟩
Conference papers
hal-02366236v1
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A Multi-Objective Genetic Algorithm to Find Active Modules in Multiplex Biological Networks
Elva-María Novoa-Del-Toro
,
Efrén Mezura-Montes
,
Matthieu Vignes
,
Frédérique Magdinier
,
Laurent Tichit
et al.
2020
Preprints, Working Papers, ...
hal-02997031v1
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A multi-objective genetic algorithm to find active modules in multiplex biological networks
Elva-María Novoa-Del-Toro
,
Efrén Mezura-Montes
,
Matthieu Vignes
,
Morgane Térézol
,
Frédérique Magdinier
et al.
Journal articles
hal-03372492v1
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Local Similarity Between Trees
Pascal Ferraro
,
Laurent Tichit
,
Serge Dulucq
Actes des 5ème Journées Ouvertes Biologie Informatique Mathématiques , Jun 2004, Montreal, Canada. pp.19
Conference papers
hal-00306628v1
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Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters
Lionel Spinelli
,
Philippe Gambette
,
Charles E. Chapple
,
Benoît Robisson
,
Anaïs Baudot
et al.
Journal articles
hal-00832028v2
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