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How and how much does RAD-seq bias genetic diversity estimates?

M. Cariou , L. Duret , S. Charlat
BMC Evolutionary Biology, 2016, 16, pp.240. ⟨10.1186/s12862-016-0791-0⟩
Journal articles hal-02016409v1

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome

E. M. Kvikstad , L. Duret
Molecular Biology and Evolution, 2014, 31, pp.23-36. ⟨10.1093/molbev/mst185⟩
Journal articles hal-02046828v1

The relationship between DNA replication and human genome organization.

Anamaria Necsulea , Claire Guillet , Jean-Charles Cadoret , Marie-Noëlle Prioleau , L. Duret
Molecular Biology and Evolution, 2009, 26 (4), pp.729-741. ⟨10.1093/molbev/msn303⟩
Journal articles hal-00353551v1

Searching for regulatory elements in human noncoding sequences

L. Duret , P. Bucher
Current Opinion in Structural Biology, 1997, 7, pp.399-406
Journal articles hal-00434977v1

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

P. Kersey , L. Bower , L. Morris , A. Horne , R. Petryszak , et al.
Nucleic Acids Research, 2005, 33 (Database issue), pp.D297-302. ⟨10.1093/nar/gki039⟩
Journal articles hal-00427773v1

Grid as a bioinformatic tool

N. Jacq , Christophe Blanchet , C. Combet , E. Cornillot , L. Duret , et al.
Parallel Computing, 2004, 30, pp.1093-1107
Journal articles hal-00427599v1

ROSO : Research on Optimized Oligonucleotide Probes for Microarrays

N. Reymond , H. Charles , L. Duret , Federica Calevro , G. Beslon , et al.
Bioinformatics, 2004, 20, pp.271-273
Journal articles hal-00427641v1

Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera

C. Ott , L. Duret , I. Chemin , C. Trepo , B. Mandrand , et al.
Journal of General Virology, 2000, 81, pp.2949-2958
Journal articles hal-00427092v1
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Genome-scale coestimation of species and gene trees.

Bastien Boussau , Gergely J Szöllosi , L. Duret , Manolo Gouy , Eric Tannier , et al.
Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩
Journal articles hal-00750148v1
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The global impact of Wolbachia on mitochondrial diversity and evolution

Marie Cariou , Laurent Duret , Sylvain Charlat
Journal of Evolutionary Biology, 2017, 30 (12), pp.2204-2210. ⟨10.1111/jeb.13186⟩
Journal articles hal-02140486v1
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Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.

Olivier Arnaiz , Jean-François Goût , Mireille Bétermier , Khaled Bouhouche , Jean Cohen , et al.
BMC Genomics, 2010, 11 (1), pp.547. ⟨10.1186/1471-2164-11-547⟩
Journal articles inserm-00617225v1

Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

C. Rizzon , E. Martin , G. Marais , L. Duret , L. Segalat , et al.
Genetics, 2003, 165, pp.1127-1135
Journal articles hal-00144031v1

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

C. Keime , F. Damiola , D. Mouchiroud , L. Duret , O. Gandrillon
BMC Bioinformatics, 2004, 5, pp.143
Journal articles hal-00124096v1

Natural history of the ERVWE 1 endogenous retroviral locus.

Bertrand Bonnaud , Jean Beliaeff , Olivier Bouton , Guy Oriol , Laurent Duret , et al.
Retrovirology, 2005, 2:57, pp.1 - 7. ⟨10.1186/1742-4692-2-57⟩
Journal articles hal-00021661v1

Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies.

Karine Buchet-Poyau , Julien Courchet , Hervé Le Hir , Bertrand Séraphin , Jean-Yves Scoazec , et al.
Nucleic Acids Research, 2007, 35 (4), pp.1289-300. ⟨10.1093/nar/gkm016⟩
Journal articles hal-00167447v1

Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere , C. Combet , Simon Penel , Christophe Blanchet , J. Thioulouse , et al.
Nucleic Acids Research, 2003, 31 (13), pp.3393-3399. ⟨10.1093/nar/gkg530⟩
Journal articles hal-00313743v1

Bioinformatics with a French accent

L.D. Hurst , L. Duret
Genome Biology, 2005, 6, pp.349.1-349.3
Journal articles hal-00427767v1

Evidence of Selection on the Domesticated ERVWE1 env Retroviral Element Involved in Placentation

B. Bonnaud , O. Bouton , G. Oriol , V. Cheynet , L. Duret , et al.
Molecular Biology and Evolution, 2004, 21, pp.1895-1901
Journal articles hal-00427546v1

Recombination drives the evolution of GC-content in the human genome

J. Meunier , L. Duret
Molecular Biology and Evolution, 2004, 21, pp.984-990
Journal articles hal-00427624v1

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

M. Sémon , J.R. Lobry , L. Duret
Molecular Biology and Evolution, 2006, 23, pp.523-529
Journal articles hal-00428013v1

Evolution of synonymous codon usage in metazoans

L. Duret
Current Opinion in Genetics and Development, 2002, 12, pp.640-649
Journal articles hal-00427267v1

The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution

L. Duret , L.D. Hurst
Molecular Biology and Evolution, 2001, 18, pp.757-762
Journal articles hal-00427169v1

ROSO: A software to search optimized oligonucleotide probes for microarrays

Hubert Charles , Nancie Reymond , Guillaume Beslon , Laurent Duret , Jean-Michel Fayard
COST853: Agricultural Biomarkers for Array-Technology, Sep 2002, Waedenswill, Switzerland
Conference papers hal-03506465v1

Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle

F Guéhenneux , L. Duret , Mb Callanan , R Bouhas , S Hayette , et al.
Leukemia, 1997, 11 (3), pp.370-375. ⟨10.1038/sj.leu.2400599⟩
Journal articles hal-02998613v1

Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions

Jean-Pierre Rouault , J.P. Rouault , C. Samarut , L. Duret , C. Tessa , et al.
Gene, 1993, 129 (2), pp.303-306. ⟨10.1016/0378-1119(93)90284-A⟩
Journal articles istex hal-02998651v1
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Less effective selection leads to larger genomes

Tristan Lefébure , Claire Morvan , Florian Malard , Clémentine François , Lara Konecny-Dupré , et al.
Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩
Journal articles hal-01544879v2

Ultra-fast sequence clustering from similarity networks with SiLiX

V. Miele , Simon Penel , L. Duret
BMC Bioinformatics, 2011, 12(116), pp.1-9. ⟨10.1186/1471-2105-12-116⟩
Journal articles hal-00698365v1

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Clémentine François , L. Duret , Laurent Simon , Florian Mermillod-Blondin , Florian Malard , et al.
Molecular Biology and Evolution, 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩
Journal articles hal-01370129v1
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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Paulina Bolívar , Laurent Guéguen , Laurent Duret , Hans Ellegren , Carina Mugal
Genome Biology, 2019, 20 (1), ⟨10.1186/s13059-018-1613-z⟩
Journal articles hal-02329971v1

Recombination, meiotic expression and human codon usage

F. Pouyet , Dominique Mouchiroud , L. Duret , M. Sémon
eLife, 2017, 6, pp.e27344. ⟨10.7554/eLife.27344.001⟩
Journal articles hal-01943796v1