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Evolutionary history of hepatitis C virus genotype 5a in France, a multicenter ANRS study

Cécile Henquell , Julien Guglielmini , Jannick Verbeeck , Antoine Mahul , Vincent Thibault , et al.
Infection, Genetics and Evolution, 2011, 11 (2), pp.496-503. ⟨10.1016/j.meegid.2010.12.015⟩
Journal articles istex hal-02014356v1
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Identification of protein secretion systems in bacterial genomes

Sophie S. Abby , Jean Cury , Julien Guglielmini , Bertrand Néron , Marie Touchon , et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep23080⟩
Journal articles pasteur-01374967v1

Automated Discovery and Phylogenetic Analysis of New Toxin-Antitoxin Systems

Julien Guglielmini , Cedric Szpirer , Michel Milinkovitch
BMC Microbiology, 2008, 8 (1), pp.104. ⟨10.1186/1471-2180-8-104⟩
Journal articles hal-03259597v1

Phylogenomics of Unusual Histone H2A Variants in Bdelloid Rotifers

Karine van Doninck , Morgan Mandigo , Jae Hur , Peter Wang , Julien Guglielmini , et al.
PLoS Genetics, 2009, 5 (3), pp.e1000401. ⟨10.1371/journal.pgen.1000401⟩
Journal articles hal-03259598v1

Updated model of group A Streptococcus M proteins based on a comprehensive worldwide study

D.J. Mcmillan , P. -A. Drèze , T. Vu , D.E. Bessen , J. Guglielmini , et al.
Clinical Microbiology and Infection, 2013, 19 (5), pp.E222-E229. ⟨10.1111/1469-0691.12134⟩
Journal articles hal-03259578v1

Diversity of bacterial type II toxin–antitoxin systems: a comprehensive search and functional analysis of novel families

Raphaël Leplae , Damien Geeraerts , Régis Hallez , Julien Guglielmini , Pierre Drèze , et al.
Nucleic Acids Research, 2011, 39 (13), pp.5513-5525. ⟨10.1093/nar/gkr131⟩
Journal articles hal-03259586v1
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Phylogeny of the Varidnaviria Morphogenesis Module: Congruence and Incongruence With the Tree of Life and Viral Taxonomy

Anthony C. Woo , Morgan Gaia , Julien Guglielmini , Violette da Cunha , Patrick Forterre
Frontiers in Microbiology, 2021, 12, pp.704052. ⟨10.3389/fmicb.2021.704052⟩
Journal articles hal-03288138v1
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High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones

Anne Jamet , Julien Guglielmini , Bryan Brancotte , Mathieu Coureuil , Daniel Euphrasie , et al.
Journal of Clinical Microbiology, 2021, 59 (3), ⟨10.1128/JCM.02454-20⟩
Journal articles hal-03218144v1

The Decay of the Chromosomally Encoded ccdO157 Toxin–Antitoxin System in the Escherichia coli Species

Natacha Mine , Julien Guglielmini , Myriam Wilbaux , Laurence van Melderen
Genetics, 2009, 181 (4), pp.1557-1566. ⟨10.1534/genetics.108.095190⟩
Journal articles hal-03259593v1

Role of a patatin-like phospholipase in Plasmodium falciparum gametogenesis and malaria transmission

Pallavi Singh , Aditi Alaganan , Kunal R More , Audrey Lorthiois , Sabine Thiberge , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (35), pp.17498-17508. ⟨10.1073/pnas.1900266116⟩
Journal articles pasteur-02890967v1
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Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance

Julien Guglielmini , Pascale Bourhy , Olivier Schiettekatte , Farida Zinini , Sylvain Brisse , et al.
PLoS Neglected Tropical Diseases, 2020, 14 (8), pp.e0008673. ⟨10.1371/journal.pntd.0008673⟩
Journal articles pasteur-02938924v1

Molecular epidemiology of hepatitis C virus genotype 5a in France (a multicenter ANRS study)

Cécile Henquell , Julien Guglielmini , Jannick Verbeeck , Jean-Luc Bailly , Armand Abergel , et al.
16th International Symposium on Hepatitis C Virus and Related Viruses, 2009, Nice, France
Conference papers hal-03268920v1
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Phylogenetic analysis of Harmonin homology domains

Baptiste Colcombet-Cazenave , Karen Druart , Crystel Bonnet , Christine Petit , Olivier Spérandio , et al.
BMC Bioinformatics, 2021, 22 (1), pp.190. ⟨10.1186/s12859-021-04116-5⟩
Journal articles hal-03200406v1
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Genomic epidemiology and strain taxonomy of Corynebacterium diphtheriae

Julien Guglielmini , Melanie Hennart , Edgar Badell , Julie Toubiana , Alexis Criscuolo , et al.
Journal of Clinical Microbiology, 2021, pp.JCM0158121. ⟨10.1128/jcm.01581-21⟩
Journal articles pasteur-03346634v1
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Simulation data for the estimation of numerical constants for approximating pairwise evolutionary distances between amino acid sequences

Thomas Bigot , Julien Guglielmini , Alexis Criscuolo
Data in Brief, 2019, 25, pp.104212. ⟨10.1016/j.dib.2019.104212⟩
Journal articles pasteur-03265225v1
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Evolution of Conjugation and Type IV Secretion Systems

Julien Guglielmini , Fernando de La Cruz , Eduardo P C Rocha
Molecular Biology and Evolution, 2013, 30, pp.315 - 331. ⟨10.1093/molbev/mss221⟩
Journal articles pasteur-01374951v1
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Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

J. Guglielmini , Bertrand Néron , E. P. C. Rocha , S. S. Abby , M. P. Garcillan-Barcia , et al.
Nucleic Acids Research, 2014, 42 (9), pp.5715 - 5727. ⟨10.1093/nar/gku194⟩
Journal articles pasteur-01374962v1
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Ongoing diphtheria outbreak in Yemen: a cross-sectional and genomic epidemiology study

Edgar Badell , Abdulilah Alharazi , Alexis Criscuolo , Khaled Abdullah Ali Almoayed , Noémie Lefrancq , et al.
The Lancet Microbe, 2021, ⟨10.1016/s2666-5247(21)00094-x⟩
Journal articles pasteur-03239537v1
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Promiscuous evolution of Group A Streptococcal M and M-like proteins

Hannah Frost , Julien Guglielmini , Sebastian Duchêne , Jake Lacey , Martina Sanderson-Smith , et al.
Microbiology, 2023, 169 (1), pp.001280. ⟨10.1099/mic.0.001280⟩
Journal articles pasteur-03965799v1
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The repertoire of ICE in prokaryotes underscores the unity, diversity, and ubiquity of conjugation.

Julien Guglielmini , Leonor Quintais , Maria Pilar Garcillán-Barcia , Fernando de La Cruz , Eduardo P C Rocha
PLoS Genetics, 2011, 7 (8), pp.e1002222. ⟨10.1371/journal.pgen.1002222⟩
Journal articles pasteur-00647077v1

Genome Analysis of Kingella kingae Strain KWG1 Reveals How a β-Lactamase Gene Inserted in the Chromosome of This Species

Philippe Bidet , Romain Basmaci , Julien Guglielmini , Catherine Doit , Christelle Jost , et al.
Antimicrobial Agents and Chemotherapy, 2016, 60 (1), pp.703-708. ⟨10.1128/AAC.02192-15⟩
Journal articles hal-03259569v1

A Systematic and Functional Classification of Streptococcus pyogenes That Serves as a New Tool for Molecular Typing and Vaccine Development

Martina Sanderson-Smith , David de Oliveira , Julien Guglielmini , David Mcmillan , Therese Vu , et al.
Journal of Infectious Diseases, 2014, 210 (8), pp.1325-1338. ⟨10.1093/infdis/jiu260⟩
Journal articles hal-03259577v1

Bacterial toxin-antitoxin systems: Translation inhibitors everywhere

Julien Guglielmini , Laurence van Melderen
Mobile Genetic Elements, 2014, 1 (4), pp.283-306. ⟨10.4161/mge.18477⟩
Journal articles hal-03259584v1
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A Dual Barcoding Approach to Bacterial Strain Nomenclature: Genomic Taxonomy of Klebsiella pneumoniae Strains

Melanie Hennart , Julien Guglielmini , Sébastien Bridel , Martin C J Maiden , Keith A. Jolley , et al.
Molecular Biology and Evolution, 2022, 39 (7), pp.msac135. ⟨10.1093/molbev/msac135⟩
Journal articles pasteur-03759200v1
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First Description of a Yersinia pseudotuberculosis Clonal Outbreak in France, Confirmed Using a New Core Genome Multilocus Sequence Typing Method

Cyril Savin , Anne-Sophie Le Guern , Fanny Chereau , Julien Guglielmini , Guillaume Heuzé , et al.
Microbiology Spectrum, 2022, 10 (4), ⟨10.1128/spectrum.01145-22⟩
Journal articles pasteur-03916947v1
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Diversity and evolution of B-family DNA polymerases

Darius Kazlauskas , Mart Krupovic , Julien Guglielmini , Patrick Forterre , Česlovas Venclovas
Nucleic Acids Research, 2020, 48 (18), pp.10142-10156. ⟨10.1093/nar/gkaa760⟩
Journal articles pasteur-02955230v1
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Proteome remodelling by the stress sigma factor RpoS/σS in Salmonella: identification of small proteins and evidence for post-transcriptional regulation

Magali Lago , Véronique Monteil , Thibaut Douche , Julien Guglielmini , Alexis Criscuolo , et al.
Scientific Reports, 2017, 7, pp.2127. ⟨10.1038/s41598-017-02362-3⟩
Journal articles pasteur-01540240v1
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Eco-Evolutionary Dynamics of Episomes among Ecologically Cohesive Bacterial Populations

Hong Xue , Otto X. Cordero , Francisco M. Camas , William Trimble , Folker Meyer , et al.
mBio, 2015, 6 (3), ⟨10.1128/mBio.00552-15⟩
Journal articles pasteur-01374963v1
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Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance

Julien Guglielmini , Pascale Bourhy , Olivier Schiettekatte , Farida Zinini , Sylvain Brisse , et al.
PLoS Neglected Tropical Diseases, 2019, 13 (4), pp.e0007374. ⟨10.1371/journal.pntd.0007374⟩
Journal articles pasteur-02547654v1
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Reply to Ku and Sun: Ancestors of modern giant and large eukaryotic dsDNA viruses infected proto-eukaryotes

Julien Guglielmini , Anthony C. Woo , Mart Krupovic , Patrick Forterre , Morgan Gaia
Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (6), pp.2749-2750. ⟨10.1073/pnas.1920855117⟩
Journal articles hal-02464290v1